Evidence map›Paper›PMID 34003252›Full record

ArticleThe Journal of cell biology2021

Poly(ADP-ribose) binding and macroH2A mediate recruitment and functions of KDM5A at DNA lesions.

Ramhari Kumbhar, Anthony Sanchez, Jullian Perren, Fade Gong, David Corujo, Frank Medina, Sravan K Devanathan, Blerta Xhemalce, Andreas Matouschek, Marcus Buschbeck and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  3. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
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  19. Histone H2A variants: Diversifying chromatin to ensure genome integrity.Seminars in cell & developmental biology · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Ramhari KumbharDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.ORCID 0000-0002-8975-2502
Anthony SanchezDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.ORCID 0000-0002-9353-6220
Jullian PerrenDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.ORCID 0000-0002-1705-3446
Fade GongDepartment of Biochemistry & Molecular Biology, Baylor College of Medicine, Houston, TX.
David CorujoCancer and Leukemia Epigenetics and Biology Program, Josep Carreras Leukaemia Cancer Institute, Barcelona, Spain.
Frank MedinaDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.
Sravan K DevanathanDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.
Blerta XhemalceDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.ORCID 0000-0002-0517-9607
Andreas MatouschekDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.
Marcus BuschbeckCancer and Leukemia Epigenetics and Biology Program, Josep Carreras Leukaemia Cancer Institute, Barcelona, Spain.
Bethany A Buck-KoehntopDepartment of Chemistry, University of Utah, Salt Lake City, UT.
Kyle M MillerDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX.ORCID 0000-0002-4544-0013
The University of Texas at Austin · USJosep Carreras Leukaemia Research Institute · ESLivestrong Foundation · USBaylor College of Medicine · USUniversity of Utah · US

Funding

Shaping DNA Damage Response Networks Via Histone H2A VariantsR01CA198279 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI Kyle M Miller · 2016 to 2026
$3.3M
MECHANISMS OF GENOME MAINTENANCE BY BROMODOMAIN CHROMATIN READER PROTEINSR01CA201268 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI MILLER, KYLE M · 2016 to 2020
$1.8M
Elucidating mechanisms of microRNA pathway deregulation in human cellsR01GM127802 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI XHEMALCE, BLERTA · 2018 to 2022
$1.7M
Deciphering a second component to the proteasomal degradation codeR01GM124501 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MATOUSCHEK, ANDREAS · 2017 to 2020
$1.6M
NCI NIH HHS R01 CA198279NCI NIH HHS R01 CA201268NIGMS NIH HHS R01 GM124501NIGMS NIH HHS R01 GM127802
6 · The paper itself

Abstract

The histone demethylase KDM5A erases histone H3 lysine 4 methylation, which is involved in transcription and DNA damage responses (DDRs). While DDR functions of KDM5A have been identified, how KDM5A recognizes DNA lesion sites within chromatin is unknown. Here, we identify two factors that act upstream of KDM5A to promote its association with DNA damage sites. We have identified a noncanonical poly(ADP-ribose) (PAR)-binding region unique to KDM5A. Loss of the PAR-binding region or treatment with PAR polymerase (PARP) inhibitors (PARPi's) blocks KDM5A-PAR interactions and DNA repair functions of KDM5A. The histone variant macroH2A1.2 is also specifically required for KDM5A recruitment and function at DNA damage sites, including homology-directed repair of DNA double-strand breaks and repression of transcription at DNA breaks. Overall, this work reveals the importance of PAR binding and macroH2A1.2 in KDM5A recognition of DNA lesion sites that drive transcriptional and repair activities at DNA breaks within chromatin that are essential for maintaining genome integrity.

Indexed as

ChromatinDNADNA Breaks, Double-StrandedDNA DamageHistonesHumansPoly Adenosine Diphosphate RibosePoly(ADP-ribose) PolymerasesRecombinational DNA RepairRetinoblastoma-Binding Protein 2ChromatinDNAHistonesKDM5A protein, humanmacroH2A histonePoly Adenosine Diphosphate RibosePoly(ADP-ribose) PolymerasesRetinoblastoma-Binding Protein 2

Identifiers

PMID34003252
PMCPMC8135068
OpenAlexW3160658822

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.