ArticleNature methods2021
Diversity in immunogenomics: the value and the challenge.
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Article in Nature methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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42citing papers in PubMed
–field-weighted citation impact
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
42 citing papers in PubMed.
- Unmasking human T cell receptor germline diversity: 335 novel alleles identified in 47 Pangenome reference individuals using the gAIRR Suite.Journal of advanced research · 2026Article
- VN1K is a pangenome-informed multi-omics and phenomics resource for the Vietnamese population.Nature communications · 2026Article
- Article
- The healthy human global project - Hong Kong: A community-based cross-sectional study of a healthy Asian population.Cell reports. Medicine · 2026Article
- Integrated drivers of basal and acute immunity in diverse human populations.Cell reports. Medicine · 2026Article
- AI-Driven BCR Modeling for Precision Immunology.International journal of molecular sciences · 2026Review
- Inference of SARS-CoV-2 exposure biomarkers using large-scale T-cell repertoire profiling.Genome medicine · 2026Article
- TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes.PLoS computational biology · 2026Article
- Germline polymorphisms in the immunoglobulin kappa and lambda loci underpinning antibody light chain repertoire variability.Nature communications · 2025Article
- Genotyping of selected germline adaptive immune system loci using short-read sequencing data.Genome research · 2025Article
- TCR2HLA: calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes.bioRxiv : the preprint server for biology · 2025Article
- Ancestral Differences in Anticancer Treatment Efficacy and Their Underlying Genomic and Molecular Alterations.Cancer discovery · 2025Article
- Annotation of gene loci and analysis of expression diversity in sheep immunoglobulin.Frontiers in immunology · 2025Article
- Analysis of CDR3 region diversity with different lengths in bovine immunoglobulin heavy chain genes.Frontiers in immunology · 2025Article
- Deep sequencing of BCR heavy chain repertoires in myalgic encephalomyelitis/chronic fatigue syndrome.Frontiers in immunology · 2025Article
- RIOT-Rapid Immunoglobulin Overview Tool-annotation of nucleotide and amino acid immunoglobulin sequences using an open germline database.Briefings in bioinformatics · 2024Article
- An unbiased comparison of immunoglobulin sequence aligners.Briefings in bioinformatics · 2024Article
- Addressing Technical Pitfalls in Pursuit of Molecular Factors That Mediate Immunoglobulin Gene Regulation.Journal of immunology (Baltimore, Md. : 1950) · 2024Article
- Investigating immunity.Nature methods · 2024Article
- The multilevel extensive diversity across the cynomolgus macaque captured by ultra-deep adaptive immune receptor repertoire sequencing.Science advances · 2024Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
35 authors.
Kerui PengDepartment of Clinical Pharmacy, School of Pharmacy, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-9362-4618
Yana SafonovaComputer Science and Engineering Department, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0002-9634-4216
Mikhail ShugayShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia.ORCID http://orcid.org/0000-0001-7826-7942
Alice B PopejoyDepartment of Biomedical Data Science, Stanford University, Stanford, CA, USA.
Oscar L RodriguezDepartment of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, USA.
Felix BredenDepartment of Biological Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.
Petter BrodinScience for Life Laboratory, Department of Women's and Children Health, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-8103-0046
Amanda M BurkhardtDepartment of Clinical Pharmacy, School of Pharmacy, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-7326-474X
Carlos BustamanteDepartment of Biomedical Data Science, Stanford University, Stanford, CA, USA.
Van-Mai Cao-LormeauLaboratory of Research on Infectious Vector-borne Diseases, Institut Louis Malardé, Papeete, French Polynesia.
Martin M CorcoranDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.
Darragh DuffyTranslational Immunology Laboratory, Institut Pasteur, Paris, France.ORCID http://orcid.org/0000-0002-8875-2308
Macarena Fuentes-GuajardoDepartamento de Tecnología Médica, Facultad de Ciencias de la Salud, Universidad de Tarapacá, Arica, Chile.
Ricardo FujitaCentro de Genética y Biología Molecular, Universidad de San Martín de Porres, La Molina, Lima, Perú.
Victor GreiffDepartment of Immunology, University of Oslo, Oslo, Norway.ORCID http://orcid.org/0000-0003-2622-5032
Vanessa D JönssonDepartments of Computational and Quantitative Medicine and Hematology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Xiao LiuTsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, China.
Lluis Quintana-MurciHuman Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, CNRS, Paris, France.
Maura RossettiUCLA Immunogenetics Center, Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.
Jianming XieDepartment of Pharmacology & Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-4112-650X
Gur YaariFaculty of Engineering, Bar Ilan Institute of Nanotechnologies and Advanced Materials, Bar Ilan University, Ramat Gan, Israel.ORCID http://orcid.org/0000-0001-9311-9884
Wei ZhangDepartment of Computer Science, City University of Hong Kong, Hong Kong, China.
Malak S AbedalthagafiGenomics Research Department, Saudi Human Genome Project, King Fahad Medical City and King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.ORCID http://orcid.org/0000-0003-2088-3632
Khalid O AdekoyaDepartment of Cell Biology and Genetics, University of Lagos, Lagos, Nigeria.
Rahaman A AhmedDepartment of Cell Biology and Genetics, University of Lagos, Lagos, Nigeria.
Wei-Chiao ChangDepartment of Clinical Pharmacy, School of Pharmacy, Taipei Medical University, New Taipei City, Taiwan.
Clive GrayDivision of Immunology, Institute of Infectious Disease and Molecular Medicine and Department of Pathology, University of Cape Town, Cape Town, South Africa.
Yusuke NakamuraCancer Precision Medicine Center, Japanese Foundation for Cancer Research, Tokyo, Japan.
William D LeesInstitute of Structural and Molecular Biology, Birkbeck College, London, UK.ORCID http://orcid.org/0000-0001-9834-6840
Purvesh KhatriInstitute for Immunity, Transplantation and Infection, School of Medicine, Stanford University, CA, USA.ORCID http://orcid.org/0000-0002-4143-4708
Houda Alachkar *Department of Clinical Pharmacy, School of Pharmacy, University of Southern California, Los Angeles, CA, USA.
Cathrine Scheepers *Centre for HIV and STIs, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.ORCID http://orcid.org/0000-0002-1683-0282
Corey T Watson *Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, USA.
Gunilla B Karlsson Hedestam *Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.
Serghei Mangul *Department of Clinical Pharmacy, School of Pharmacy, University of Southern California, Los Angeles, CA, USA. serghei.mangul@gmail.com.ORCID http://orcid.org/0000-0003-4770-3443
Funding
Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5MTranslational Incubator CoreU19AI109662 · NIAID · STANFORD UNIVERSITY · PI GLENN, JEFFREY S · 2014 to 2019
$28.6MOncology Research Career Development ProgramK12CA001727 · NCI · CITY OF HOPE NATIONAL MEDICAL CENTER · PI MORTIMER, JOANNE E. · 1992 to 2024
$14.6MThe Future of PharmGKB Funding Under NHGRIU41HG009649 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL · 2017 to 2020
$13.4MNeuro HPA Project 1U54AG062334 · NIA · EMORY UNIVERSITY · PI Cecile Delille Lahiri, Vasiliki Michopoulos · 2018 to 2026
$12.2MAn ethnically diverse genomic reference resource for the human heavy and light chain immunoglobulin lociR24AI138963 · NIAID · UNIVERSITY OF LOUISVILLE · PI Melissa Laird Smith, Corey Taylor Watson · 2018 to 2026
$5.5MGiant MagnetoResistive (GMR) Sensors for Measuring Influenza VaccineR01AI125197 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH, WANG, SHAN X. · 2016 to 2021
$5.0MNigeria HIV Research Training ProgramD43TW010934 · FIC · EMORY UNIVERSITY · PI Ighovwerha Ofotokun · 2019 to 2026
$2.4MImmunoglobulin gene diversity in an African population and impact on antibody function in HIV infectionU01AI136677 · NIAID · WITS HEALTH CONSORTIUM (PTY), LTD · PI MORRIS, LYNN · 2017 to 2021
$1.2MPopulation level characterization of human immunoglobulin heavy chain germline variants with impacts on variability in the Ab repertoire of healthy adultsR21AI142590 · NIAID · UNIVERSITY OF LOUISVILLE · PI MARASCO, WAYNE A., WATSON, COREY TAYLOR · 2019 to 2020
$477kFIC NIH HHS D43 TW010934NCI NIH HHS K12 CA001727NHGRI NIH HHS U41 HG009649NIAID NIH HHS R01 AI125197NIAID NIH HHS R21 AI142590NIAID NIH HHS R24 AI138963NIAID NIH HHS U01 AI136677NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI109662NIA NIH HHS U54 AG062334
Abstract
PubMed holds no abstract for this paper.
Indexed as
GenomicsImmunogeneticsB-LymphocytesDatabases, GeneticGerm CellsHumansReceptors, Antigen, B-CellReceptors, Antigen, T-CellT-LymphocytesWhole Genome SequencingReceptors, Antigen, B-CellReceptors, Antigen, T-Cell
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.