Evidence map›Paper›PMID 34001952›Full record

ArticleScientific reports2021

Discovery of primary prostate cancer biomarkers using cross cancer learning.

Kaiyue Zhou, Suzan Arslanturk, Douglas B Craig, Elisabeth Heath, Sorin Draghici

Open access · goldAbstract readValidation Study
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Impossibility theorems for feature attribution.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Advances in Prostate Cancer Biomarkers and Probes.Cyborg and bionic systems (Washington, D.C.) · 2024
    Review
  7. Review
  8. Article
  9. Article
  10. ZNF750: A Novel Prognostic Biomarker in Metastatic Prostate Cancer.International journal of molecular sciences · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kaiyue ZhouDepartment of Computer Science, Wayne State University, Detroit, 48201, USA.
Suzan ArslanturkDepartment of Computer Science, Wayne State University, Detroit, 48201, USA. suzan.arslanturk@wayne.edu.
Douglas B CraigDepartment of Oncology, Wayne State University, Detroit, 48201, USA.
Elisabeth HeathDepartment of Oncology, Wayne State University, Detroit, 48201, USA.
Sorin DraghiciDepartment of Computer Science, Wayne State University, Detroit, 48201, USA.
Wayne State University · USThe Barbara Ann Karmanos Cancer Institute · US

Funding

Tissue/InformaticsP50CA186786 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Ganesh S Palapattu · 2014 to 2026
$27.6M
National Institute of Health 2P50CA186786-06National Science Foundation 1948338NCI NIH HHS P50 CA186786
6 · The paper itself

Abstract

Prostate cancer (PCa), the second leading cause of cancer death in American men, is a relatively slow-growing malignancy with multiple early treatment options. Yet, a significant number of low-risk PCa patients are over-diagnosed and over-treated with significant and long-term quality of life effects. Further, there is ever increasing evidence of metastasis and higher mortality when hormone-sensitive or castration-resistant PCa tumors are treated indistinctively. Hence, the critical need is to discover clinically-relevant and actionable PCa biomarkers by better understanding the biology of PCa. In this paper, we have discovered novel biomarkers of PCa tumors through cross-cancer learning by leveraging the pathological and molecular similarities in the DNA repair pathways of ovarian, prostate, and breast cancer tumors. Cross-cancer disease learning enriches the study population and identifies genetic/phenotypic commonalities that are important across diseases with pathological and molecular similarities. Our results show that ADIRF, SLC2A5, C3orf86, HSPA1B are among the most significant PCa biomarkers, while MTRNR2L1, EEPD1, TEPP and VN1R2 are jointly important biomarkers across prostate, breast and ovarian cancers. Our validation results have further shown that the discovered biomarkers can predict the disease state better than any randomly selected subset of differentially expressed prostate cancer genes.

Indexed as

Deep LearningGene Expression Regulation, NeoplasticBiomarkers, TumorBreast NeoplasmsComputational BiologyDatasets as TopicFemaleGene Expression ProfilingHumansMaleOvarian NeoplasmsProstateProstatic NeoplasmsRisk AssessmentBiomarkers, Tumor

Identifiers

PMID34001952
PMCPMC8128891
OpenAlexW3163724318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.