Evidence map›Paper›PMID 34000285›Full record

ArticleJournal of theoretical biology2021

A multiscale continuum model of the vertebrate outer retina: The temporal dynamics of background-induced flicker enhancement.

Steven M Baer, Shaojie Chang, Sharon M Crook, Carl L Gardner, Jeremiah R Jones, Christian Ringhofer, Ralph F Nelson

Open access · greenAbstract read
In one paragraph

Article in Journal of theoretical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 63% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Steven M BaerSchool of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85287, United States. Electronic address: steven.baer@asu.edu.
Shaojie ChangSchool of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85287, United States; The High School Affiliated to Beijing Normal University, Beijing 100052, PR China.
Sharon M CrookSchool of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85287, United States.
Carl L GardnerSchool of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85287, United States.
Jeremiah R JonesSchool of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85287, United States.
Christian RinghoferSchool of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85287, United States.
Ralph F NelsonNeural Circuits Unit, Basic Neuroscience Program, NINDS, NIH, Bethesda, MD 20892, United States.
Arizona State University · USBeijing Normal University · CNNational Institutes of Health · US

Funding

Structure And Function In Retinal NeuronsZIANS002631 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI NELSON, RALPH F · 2009 to 2023
$6.6M
Intramural NIH HHS ZIA NS002631
6 · The paper itself

Abstract

The retina is a part of the central nervous system that is accessible, well documented, and studied by researchers spanning the clinical, experimental, and theoretical sciences. Here, we mathematically model the subcircuits of the outer plexiform layer of the retina on two spatial scales: that of an individual synapse and that of the scale of the receptive field (hundreds to thousands of synapses). To this end we formulate a continuum spine model (a partial differential equation system) that incorporates the horizontal cell syncytium and its numerous processes (spines) within cone pedicles. With this multiscale modeling approach, detailed biophysical mechanisms at the synaptic level are retained while scaling up to the receptive field level. As an example of its utility, the model is applied to study background-induced flicker enhancement in which the onset of a dim background enhances the center flicker response of horizontal cells. Simulation results, in comparison with flicker enhancement data for square, slit, and disk test regions, suggest that feedback mechanisms that are voltage-axis modulators of cone calcium channels (for example, ephaptic and/or pH feedback) are robust in capturing the temporal dynamics of background-induced flicker enhancement. The value and potential of this continuum spine approach is that it provides a framework for mathematically modeling the input-output properties of the entire receptive field of the outer retina while implementing the latest models for transmission mechanisms at the synaptic level.

Indexed as

RetinaRetinal Cone Photoreceptor CellsAnimalsFeedback, PhysiologicalSynapsesVertebratesDendritic spinesFeedbackRetinal cone photoreceptorsRetinal horizontal cellsSynaptic transmission

Identifiers

PMID34000285
PMCPMC11385586
OpenAlexW3160750646

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.