Evidence map›Paper›PMID 33999949›Full record

ArticlePLoS pathogens2021

Characterization of ALTO-encoding circular RNAs expressed by Merkel cell polyomavirus and trichodysplasia spinulosa polyomavirus.

Rong Yang, Eunice E Lee, Jiwoong Kim, Joon H Choi, Elysha Kolitz, Yating Chen, Clair Crewe, Nicholas J H Salisbury, Philipp E Scherer, Clay Cockerell and 8 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Review
  3. Roles and Applications of Circular RNA in Virus Infection.International journal of molecular sciences · 2025
    Review
  4. Article
  5. NZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2025
    Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Molecular mechanisms of circular RNA translation.Experimental & molecular medicine · 2024
    Review
  11. Intercellular Transport of Viral Proteins.Results and problems in cell differentiation · 2024
    Review
  12. Exosomes and SARS-CoV-2 infection.Frontiers in immunology · 2024
    Review
  13. Article
  14. Membrane-bound Merkel cell polyomavirus middle T protein constitutively activates PLCγ1 signaling through Src-family kinases.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Rong YangDepartment of Dermatology, UT Southwestern Medical Center, Dallas, Texas, United States of America.
Eunice E LeeDepartment of Dermatology, UT Southwestern Medical Center, Dallas, Texas, United States of America.
Jiwoong KimQuantitative Biomedical Research Center, Department of Population and Data Sciences, UT Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0003-0220-9329
Joon H ChoiDepartment of Molecular Biosciences, University of Texas, Austin, Texas, United States of America.
Elysha KolitzDepartment of Dermatology, UT Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0002-4664-2063
Yating ChenDepartment of Molecular Biosciences, University of Texas, Austin, Texas, United States of America.
Clair CreweTouchstone Diabetes Center, Department of Internal Medicine, the UT Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0002-3117-5327
Nicholas J H SalisburyDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0002-7619-6850
Philipp E SchererTouchstone Diabetes Center, Department of Internal Medicine, the UT Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0003-0680-3392
Clay CockerellDepartment of Dermatology, UT Southwestern Medical Center, Dallas, Texas, United States of America.
Taylor R SmithDepartment of Dermatology, Louisiana State University Health Sciences Center, New Orleans, Louisiana, United States of America.ORCID 0000-0001-8356-5987
Leslie RosenDepartment of Dermatology, Louisiana State University Health Sciences Center, New Orleans, Louisiana, United States of America.ORCID 0000-0002-8722-436X
Louisa VerlindenDepartment of Dermatology, Ghent University Hospital, Ghent, Belgium.
Denise A GallowayDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0002-6713-6127
Christopher B BuckLab of Cellular Oncology, NCI, NIH, Bethesda, Maryland, United States of America.ORCID 0000-0003-3165-8094
Mariet C FeltkampDepartment of Medical Microbiology, Leiden University Medical Center, Leiden, Netherlands.ORCID 0000-0001-5993-9846
Christopher S SullivanDepartment of Molecular Biosciences, University of Texas, Austin, Texas, United States of America.
Richard C WangDepartment of Dermatology, UT Southwestern Medical Center, Dallas, Texas, United States of America.ORCID 0000-0003-4543-8295
Southwestern Medical Center · USThe University of Texas at Austin · USFred Hutch Cancer Center · USLouisiana State University Health Sciences Center New Orleans · USGhent University Hospital · BELeiden University Medical Center · NL

Funding

Molecular biology of human polyomavirusesZIABC011090 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BUCK, CHRISTOPHER · 2009 to 2025
$9.3M
Human Papillomavirus and Polyomavirus Associated Malignancies.R35CA209979 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GALLOWAY, DENISE A. · 2017 to 2023
$6.5M
Mechanisms of Glucose Dependence in Proliferating CellsR01AR072655 · NIAMS · UT SOUTHWESTERN MEDICAL CENTER · PI WANG, RICHARD C · 2018 to 2022
$1.7M
Elucidating the function of a family of respiratory viral long noncoding RNAsR21AI147178 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI SULLIVAN, CHRISTOPHER S. · 2019 to 2020
$418k
Regulation and Function of Human Polyomavirus circular RNAsR21AI168698 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI WANG, RICHARD C · 2023 to 2024
$384k
NCI NIH HHS R35 CA209979NIAID NIH HHS R21 AI147178NIAID NIH HHS R21 AI168698NIAMS NIH HHS R01 AR072655
6 · The paper itself

Abstract

Circular RNAs (circRNAs) are a conserved class of RNAs with diverse functions, including serving as messenger RNAs that are translated into peptides. Here we describe circular RNAs generated by human polyomaviruses (HPyVs), some of which encode variants of the previously described alternative large T antigen open reading frame (ALTO) protein. Circular ALTO RNAs (circALTOs) can be detected in virus positive Merkel cell carcinoma (VP-MCC) cell lines and tumor samples. CircALTOs are stable, predominantly located in the cytoplasm, and N6-methyladenosine (m6A) modified. The translation of MCPyV circALTOs into ALTO protein is negatively regulated by MCPyV-generated miRNAs in cultured cells. MCPyV ALTO expression increases transcription from some recombinant promoters in vitro and upregulates the expression of multiple genes previously implicated in MCPyV pathogenesis. MCPyV circALTOs are enriched in exosomes derived from VP-MCC lines and circALTO-transfected 293T cells, and purified exosomes can mediate ALTO expression and transcriptional activation in MCPyV-negative cells. The related trichodysplasia spinulosa polyomavirus (TSPyV) also expresses a circALTO that can be detected in infected tissues and produces ALTO protein in cultured cells. Thus, human polyomavirus circRNAs are expressed in human tumors and infected tissues and express proteins that have the potential to modulate the infectious and tumorigenic properties of these viruses.

Indexed as

Antigens, Viral, TumorCarcinoma, Merkel CellExosomesGene Expression Regulation, ViralHEK293 CellsHumansMerkel cell polyomavirusMicroRNAsPolyomavirus InfectionsRNA, CircularRNA, MessengerRNA, ViralTumor Virus InfectionsAntigens, Viral, TumorMicroRNAsRNA, CircularRNA, MessengerRNA, Viral

Identifiers

PMID33999949
PMCPMC8158866
OpenAlexW3162123938

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.