Evidence map›Paper›PMID 33995918›Full record

ArticleComputational and structural biotechnology journal2021

Improved cluster ranking in protein-protein docking using a regression approach.

Shahabeddin Sotudian, Israel T Desta, Nasser Hashemi, Shahrooz Zarbafian, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch Paschalidis

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Computational and structural biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shahabeddin SotudianDivision of Systems Engineering, Boston University, Boston, USA.
Israel T DestaDepartment of Biomedical Engineering, Boston University.
Nasser HashemiDivision of Systems Engineering, Boston University, Boston, USA.
Shahrooz ZarbafianDivision of Systems Engineering, Boston University, Boston, USA.
Dima KozakovLaufer Center for Physical and Quantitative Biology, Institute for Advanced Computational Sciences, Stony Brook University, Stony Brook, USA.
Pirooz VakiliDivision of Systems Engineering, Boston University, Boston, USA.
Sandor VajdaDepartment of Biomedical Engineering, Boston University.
Ioannis Ch PaschalidisDivision of Systems Engineering, Boston University, Boston, USA.

Funding

Analysis and Prediction of Molecular InteractionsR35GM118078 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI SANDOR VAJDA · 2016 to 2026
$6.5M
Optimizing and Learning Strategies for Protein Docking R01GM135930 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI VAKILI, PIROOZ · 2019 to 2021
$561k
Fast energy evaluation for multi-protein systemsR21GM127952 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI KOZAKOV, DMYTRO · 2018 to 2019
$432k
NIGMS NIH HHS R01 GM135930NIGMS NIH HHS R21 GM127952NIGMS NIH HHS R35 GM118078
6 · The paper itself

Abstract

We develop a

Indexed as

Machine learningProtein dockingRanking

Identifiers

PMID33995918
PMCPMC8102165

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.