Evidence map›Paper›PMID 33993232›Full record

ArticleRheumatology (Oxford, England)2022

Identification of a shared genetic risk locus for Kawasaki disease and immunoglobulin A vasculitis by a cross-phenotype meta-analysis.

Elio G Carmona, Jose A García-Giménez, Raquel López-Mejías, Chiea Chuen Khor, Jong-Keuk Lee, Ekim Taskiran, Seza Ozen, Alojzija Hocevar, Lili Liu, Mario Gorenjak and 11 more

Open access · greenAbstract read
In one paragraph

Article in Rheumatology (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. [Research advances in the etiology and pathogenesis of immunoglobulin A vasculitis].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. IgA Vasculitis: Influence ofJournal of clinical medicine · 2022
    Article
  8. Article
  9. Review
  10. IgA Vasculitis: Etiology, Treatment, Biomarkers and Epigenetic Changes.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 12 institutions in 7 countries.

Elio G CarmonaUnidad de Enfermedades Autoinmunes Sistémicas, Hospital Clínico San Cecilio, Instituto de Investigación Biosanitaria de Granada ibs.GRANADA.
Jose A García-GiménezInstituto de Parasitología y Biomedicina 'López-Neyra', CSIC, PTS Granada, Granada.
Raquel López-MejíasEpidemiology, Genetics and Atherosclerosis Research Group on Systemic Inflammatory Diseases, Hospital Universitario Marqués de Valdecilla, IDIVAL, Santander, Spain.
Chiea Chuen KhorGenome Institute of Singapore, Singapore.
Jong-Keuk LeeAsan Institute for Life Sciences, University of Ulsan College of Medicine, Seoul, Korea.
Ekim TaskiranDepartment of Medical Genetics, Faculty of Medicine, Hacettepe University.
Seza OzenDepartment of Paediatrics, Division of Rheumatology, Hacettepe University Faculty of Medicine, Ankara, Turkey.
Alojzija HocevarDepartment of Rheumatology, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Lili LiuDivision of Nephrology, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Mario GorenjakCentre for Human Molecular Genetics and Pharmacogenomics, Faculty of Medicine, University of Maribor, Maribor, Slovenia.
Uroš PotočnikCentre for Human Molecular Genetics and Pharmacogenomics, Faculty of Medicine, University of Maribor, Maribor, Slovenia.
Krzysztof KirylukDivision of Nephrology, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Norberto Ortego-CentenoSystemic Autoimmune Diseases Unit, Hospital Universitario San Cecilio.
María C CidDepartment of Autoimmune Diseases, Hospital Clinic, IDIBAPS, University of Barcelona, Barcelona.
José Hernández-RodríguezDepartment of Autoimmune Diseases, Hospital Clinic, IDIBAPS, University of Barcelona, Barcelona.
Santos CastañedaRheumatology Division, Hospital de La Princesa, IIS-Princesa, Universidad Autónoma de Madrid, Madrid, Spain.
Miguel A González-GayEpidemiology, Genetics and Atherosclerosis Research Group on Systemic Inflammatory Diseases, Hospital Universitario Marqués de Valdecilla, IDIVAL, Santander, Spain.
David BurgnerMurdoch Children's Research Institute, Royal Children's Hospital.
Javier MartínInstituto de Parasitología y Biomedicina 'López-Neyra', CSIC, PTS Granada, Granada.
Ana MárquezUnidad de Enfermedades Autoinmunes Sistémicas, Hospital Clínico San Cecilio, Instituto de Investigación Biosanitaria de Granada ibs.GRANADA.
Spanish IgA Vasculitis Consortium;* International Kawasaki Disease Genetics Consortium
Instituto de Parasitología y Biomedicina "López - Neyra" · ESColumbia University · USConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESHacettepe University · TRInstituto de Investigación Biosanitaria de Granada · ESInstituto de Investigación Marqués de Valdecilla · ESUniversity of Maribor · SIGenome Institute of Singapore · SGLjubljana University Medical Centre · SIUniversidad Autónoma de Madrid · ESUniversity of Melbourne · AUUniversity of Ulsan · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesCombining of genomic data of different pathologies as a single phenotype has emerged as a useful strategy to identify genetic risk loci shared among immune-mediated diseases. Our study aimed to increase our knowledge of the genetic contribution to Kawasaki disease (KD) and IgA vasculitis (IgAV) by performing the first comprehensive large-scale analysis on the genetic overlap between them.

methodsA total of 1190 vasculitis patients and 11 302 healthy controls were analysed. First, in the discovery phase, genome-wide data of 405 KD patients and 6252 controls and 215 IgAV patients and 1324 controls, all of European origin, were combined using an inverse variance meta-analysis. Second, the top associated polymorphisms were selected for replication in additional independent cohorts (570 cases and 3726 controls). Polymorphisms with P-values ≤5 × 10-8 in the global IgAV-KD meta-analysis were considered as shared genetic risk loci.

resultsA genetic variant, rs3743841, located in an intron of the NAGPA gene, reached genome-wide significance in the cross-disease meta-analysis (P = 8.06 × 10-10). Additionally, when IgAV was individually analysed, a strong association between rs3743841 and this vasculitis was also evident [P = 1.25 × 10-7; odds ratio = 1.47 (95% CI 1.27, 1.69)]. In silico functional annotation showed that this polymorphism acts as a regulatory variant modulating the expression levels of the NAGPA and SEC14L5 genes.

conclusionWe identified a new risk locus with pleiotropic effects on the two childhood vasculitides analysed. This locus represents the strongest non-HLA signal described for IgAV to date.

Indexed as

Genetic LociGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyHumansIgA VasculitisMucocutaneous Lymph Node SyndromePhenotypePhosphoric Diester HydrolasesPolymorphism, Single NucleotideN-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidasePhosphoric Diester Hydrolasesgenome-wide association studyIgA vasculitisKawasaki diseasesingle-nucleotide polymorphism

Identifiers

PMID33993232
PMCPMC10687354
OpenAlexW3163073621

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.