Evidence map›Paper›PMID 33990934›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2021

Retrospective whole-genome comparison of Salmonella enterica serovar Enteritidis from foodborne outbreaks in Southern Brazil.

Andréa K Mascitti, Diéssy Kipper, Rafael O Dos Reis, Juliana S da Silva, André S K Fonseca, Nilo Ikuta, Eduardo C Tondo, Vagner R Lunge

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Andréa K MascittiLutheran University of Brazil, 8001, Canoas, Rio Grande Do Sul, 92425-020, Brazil.
Diéssy KipperLutheran University of Brazil, 8001, Canoas, Rio Grande Do Sul, 92425-020, Brazil.
Rafael O Dos ReisLutheran University of Brazil, 8001, Canoas, Rio Grande Do Sul, 92425-020, Brazil.
Juliana S da SilvaLutheran University of Brazil, 8001, Canoas, Rio Grande Do Sul, 92425-020, Brazil.
André S K FonsecaSimbios Biotechnology, Cachoeirinha, Rio Grande do Sul, Brazil.
Nilo IkutaSimbios Biotechnology, Cachoeirinha, Rio Grande do Sul, Brazil.
Eduardo C TondoInstitute of Food Science and Technology, Federal University of Rio Grande Do Sul, Porto Alegre, Rio Grande do Sul, Brazil.
Vagner R LungeLutheran University of Brazil, 8001, Canoas, Rio Grande Do Sul, 92425-020, Brazil. lunge@ulbra.br.ORCID http://orcid.org/0000-0003-4012-8650

Funding

Whole Genome Sequencing for State Food Testing Laboratories competition BU18FD006229 · FDA · WADSWORTH CENTER · PI WOLFGANG, WILLIAM J · 2017 to 2018
$330k
Conselho Nacional de Desenvolvimento Científico e Tecnológico 311010/2017-2Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 001FDA HHS U18 FD006229
6 · The paper itself

Abstract

Salmonella enterica serovar Enteritidis is frequently isolated from animal-source foods associated with human salmonellosis outbreaks. This serovar was spread to animal (mainly poultry) farms worldwide in the 1980s, and it is still detected in foods produced in many countries, including Brazil. The present study reports a retrospective genome-wide comparison of S. Enteritidis from foodborne outbreaks in Southern Brazil in the last two decades. Fifty-two S. Enteritidis isolates were obtained from foodborne outbreaks occurring in different cities of the Brazilian southernmost State, Rio Grande do Sul (RS), from 2003 to 2015. Whole-genome sequences (WGS) from these isolates were obtained and comparatively analyzed with 65 additional genomes from NCBI. Phylogenetic and Bayesian analyses were performed to study temporal evolution. Genes related to antibiotic resistance and virulence were also evaluated. The results demonstrated that all S. Enteritidis isolates from Southern Brazil clustered in the global epidemic clade disseminated worldwide originally in the 1980s. Temporal analysis demonstrated that all Brazilian isolates had a tMRCA (time to most recent common ancestor) in 1986 with an effective population size (N

Indexed as

Disease OutbreaksGenome, BacterialSalmonella enteritidisAnimalsBayes TheoremBrazilHumansPhylogenyRetrospective StudiesSalmonella Food PoisoningBrazilFoodborne outbreaksSalmonella enterica

Identifiers

PMID33990934
PMCPMC8324652

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.