Evidence map›Paper›PMID 33990628›Full record

ArticleScientific reports2021

Analysis of Mycobacterium africanum in the last 17 years in Aragon identifies a specific location of IS6110 in Lineage 6.

Jessica Comín, María Luisa Monforte, Sofía Samper, Aragonese Working Group on Molecular Epidemiology of Tuberculosis (EPIMOLA), Isabel Otal

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. In-depth Analysis of ISFrontiers in microbiology · 2022
    Article
  3. Understanding the Genetic Diversity ofFrontiers in genetics · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 6 institutions in 1 country.

Jessica ComínInstituto Aragonés de Ciencias de la Salud, Zaragoza, Spain.
María Luisa MonforteHospital Royo Villanova, Zaragoza, Spain.
Sofía SamperInstituto Aragonés de Ciencias de la Salud, Zaragoza, Spain. ssamper.iacs@aragon.es.
Aragonese Working Group on Molecular Epidemiology of Tuberculosis (EPIMOLA)
Isabel OtalFundación IIS Aragón, Zaragoza, Spain.
Universidad de Zaragoza · ESFundacion Agencia Aragonesa para la Investigacion y el Desarrollo · ESHospital Clínico Universitario Lozano Blesa · ESHospital Royo Villanova · ESHospital Universitario Miguel Servet · ESInstituto de Investigación Sanitaria Aragón · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The purpose of this study was to increase our knowledge about Mycobacterium africanum and report the incidence and characteristics of tuberculosis (TB) due to their lineages in Aragon, Spain, over the period 2003-2019. The study includes all the cases in our region, where all the M. tuberculosis complex isolates are systematically characterised. We detected 31 cases of M. africanum among 2598 cases of TB in the period studied. TB caused by M. africanum is rare (1.19%) in our population, and it affects mainly men of economically productive age coming from West African countries. Among the isolates, Lineage (L) 6 was more frequent than L5. The genotyping of these strains identified five clusters and 13 strains with a unique pattern. The isolates' characterisation identified a copy of IS6110 within the moaX gene, which turned out to be specific for L6. It will allow the differentiation of this lineage from the rest of MTBC with a simple PCR reaction. It remains to be established whether this polymorphism may limit M. africanum transmission. Furthermore, a mutation in the mutT2 promoter was found as specific for L6 strains, which could be related to the high variability found for L6 compared to L5.

Indexed as

Africa, WesternBacterial ProteinsDNA, BacterialDNA Transposable ElementsEmigrants and ImmigrantsGenotyping TechniquesHumansIncidenceMolecular TypingMycobacterium tuberculosisRetrospective StudiesSpainSulfurtransferasesTuberculosisBacterial ProteinsDNA, BacterialDNA Transposable Elementsmolybdopterin synthaseSulfurtransferases

Identifiers

PMID33990628
PMCPMC8121931
OpenAlexW3162647284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.