ArticleScientific data2021
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds.
Article in Scientific data, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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Who cites it
43 citing papers in PubMed.
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- Metagenomic insight into the diversity and biogeochemical functions of microbial communities in the maar tropical Lake Atexcac.Microbiology (Reading, England) · 2026Article
- Antimicrobial resistance dissemination via horizontal gene transfer is constrained in stratified waters.Communications biology · 2026Article
- Uncovering hidden phylo- and ecogenomic diversity of the widespread methanotrophic genus Methylobacter.FEMS microbiology ecology · 2026Article
- MagnetotacticISME communications · 2026Article
- Widespread and intron-rich mirusviruses are predicted to reproduce in nuclei of unicellular eukaryotes.Nature microbiology · 2026Article
- Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales.Nature communications · 2025Article
- Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance.Scientific reports · 2025Article
- An organotrophicApplied and environmental microbiology · 2025Article
- Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium.Nature microbiology · 2025Article
- Metagenome-assembled genome ofMicrobiology resource announcements · 2025Article
- Microbial metagenomes from Lake Soyang, the largest freshwater reservoir in South Korea.Scientific data · 2025Article
- Dissolved organic matter and sulfide enhance the CHMicrobiology spectrum · 2025Article
- Microbial magnetite oxidation via MtoAB porin-multiheme cytochrome complex inApplied and environmental microbiology · 2025Article
- Microbial magnetite oxidation via MtoAB porin-multiheme cytochrome complex inbioRxiv : the preprint server for biology · 2025Article
- Proteomic evidence for aerobic methane production in groundwater by methylotrophic Methylotenera.The ISME journal · 2025Article
- Magnetotactic bacteria affiliated with diverse Pseudomonadota families biomineralize intracellular Ca-carbonate.The ISME journal · 2025Article
- Analysis of metagenomic data.Nature reviews. Methods primers · 2025Article
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9 authors.
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Abstract
Stratified lakes and ponds featuring steep oxygen gradients are significant net sources of greenhouse gases and hotspots in the carbon cycle. Despite their significant biogeochemical roles, the microbial communities, especially in the oxygen depleted compartments, are poorly known. Here, we present a comprehensive dataset including 267 shotgun metagenomes from 41 stratified lakes and ponds mainly located in the boreal and subarctic regions, but also including one tropical reservoir and one temperate lake. For most lakes and ponds, the data includes a vertical sample set spanning from the oxic surface to the anoxic bottom layer. The majority of the samples were collected during the open water period, but also a total of 29 samples were collected from under the ice. In addition to the metagenomic sequences, the dataset includes environmental variables for the samples, such as oxygen, nutrient and organic carbon concentrations. The dataset is ideal for further exploring the microbial taxonomic and functional diversity in freshwater environments and potential climate change impacts on the functioning of these ecosystems.
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