Evidence map›Paper›PMID 33990576›Full record

ArticleNature communications2021

Context-specific action of macrolide antibiotics on the eukaryotic ribosome.

Maxim S Svetlov, Timm O Koller, Sezen Meydan, Vaishnavi Shankar, Dorota Klepacki, Norbert Polacek, Nicholas R Guydosh, Nora Vázquez-Laslop, Daniel N Wilson, Alexander S Mankin

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 2 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 2 syntheses or guidelines pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Bactericidal activity of silver nanoparticles in drug-resistant bacteria.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Pooled it
  3. Review
  4. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
    Review
  5. Review
  6. Article
  7. Article
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  9. Review
  10. Article
  11. Article
  12. Article
  13. Motif-ation matters.Nature chemical biology · 2023
    Article
  14. Article
  15. Article
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  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Maxim S SvetlovCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.ORCID 0000-0003-1459-5685
Timm O KollerInstitute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.
Sezen MeydanCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Vaishnavi ShankarDepartment of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.
Dorota KlepackiCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Norbert PolacekDepartment of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.ORCID 0000-0001-5317-3990
Nicholas R GuydoshLaboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD, USA.ORCID 0000-0001-7116-326X
Nora Vázquez-LaslopCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.ORCID 0000-0003-2256-693X
Daniel N WilsonInstitute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany. daniel.wilson@chemie.uni-hamburg.de.ORCID 0000-0003-3816-3828
Alexander S MankinCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA. shura@uic.edu.ORCID 0000-0002-3301-827X
University of Illinois Chicago · USUniversität Hamburg · DEUniversity of Bern · CHNational Institute of Diabetes and Digestive and Kidney Diseases · USNational Institutes of Health · US

Funding

Molecular mechanism of the ribosome and functions of translational regulationZIADK075132 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GUYDOSH, NICHOLAS · 2016 to 2025
$14.3M
Unraveling context specificity of translation by elucidating the mechanism of action of auxiliary translation factorsR35GM127134 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN · 2018 to 2026
$3.2M
Understanding genome-wide and single-molecule dynamics of colliding ribosomes during health and diseaseFI2GM137845 · NIGMS · U.S. NATIONAL INST DIABETES/DIGST/KIDNEY · PI MEYDAN MARKS, FATMA SEZEN · 2020 to 2020
–
NIGMS NIH HHS FI2 GM137845NIGMS NIH HHS R35 GM127134
6 · The paper itself

Abstract

Macrolide antibiotics bind in the nascent peptide exit tunnel of the bacterial ribosome and prevent polymerization of specific amino acid sequences, selectively inhibiting translation of a subset of proteins. Because preventing translation of individual proteins could be beneficial for the treatment of human diseases, we asked whether macrolides, if bound to the eukaryotic ribosome, would retain their context- and protein-specific action. By introducing a single mutation in rRNA, we rendered yeast Saccharomyces cerevisiae cells sensitive to macrolides. Cryo-EM structural analysis showed that the macrolide telithromycin binds in the tunnel of the engineered eukaryotic ribosome. Genome-wide analysis of cellular translation and biochemical studies demonstrated that the drug inhibits eukaryotic translation by preferentially stalling ribosomes at distinct sequence motifs. Context-specific action markedly depends on the macrolide structure. Eliminating macrolide-arrest motifs from a protein renders its translation macrolide-tolerant. Our data illuminate the prospects of adapting macrolides for protein-selective translation inhibition in eukaryotic cells.

Indexed as

Anti-Bacterial AgentsBinding SitesCryoelectron MicroscopyEukaryotic CellsHumansMacrolidesModels, MolecularMutationProtein BindingProtein BiosynthesisProtein Synthesis InhibitorsRibosomesRNA, FungalRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAnti-Bacterial AgentsMacrolidesProtein Synthesis InhibitorsRNA, FungalRNA, RibosomalRNA, ribosomal, 25SSaccharomyces cerevisiae Proteins

Identifiers

PMID33990576
PMCPMC8121947
OpenAlexW3163825589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.