Evidence map›Paper›PMID 33989637›Full record

ArticleThe Journal of biological chemistry

Structural basis of KdpD histidine kinase binding to the second messenger c-di-AMP.

Anirudha Dutta, Mona Batish, Vijay Parashar

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Universal Stress Proteins: From Gene to Function.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Anirudha DuttaDepartment of Medical and Molecular Sciences, University of Delaware, Newark, Delaware, USA.
Mona BatishDepartment of Medical and Molecular Sciences, University of Delaware, Newark, Delaware, USA.
Vijay ParasharDepartment of Medical and Molecular Sciences, University of Delaware, Newark, Delaware, USA. Electronic address: parashar@udel.edu.
University of Delaware · US

Funding

Structural biology of c-di-AMP signaling in Gram-positive bacteriaR35GM119504 · NIGMS · UNIVERSITY OF DELAWARE · PI PARASHAR, VIJAY KUMAR · 2016 to 2020
$1.6M
Pilatus 6mS10OD021832 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADAMS, PAUL DAVID · 2016 to 2016
$980k
NIGMS NIH HHS R35 GM119504NIH HHS S10 OD021832
6 · The paper itself

Abstract

The KdpDE two-component system regulates potassium homeostasis and virulence in various bacterial species. The KdpD histidine kinases (HK) of this system contain a universal stress protein (USP) domain which binds to the second messenger cyclic-di-adenosine monophosphate (c-di-AMP) for regulating transcriptional output from this two-component system in Firmicutes such as Staphylococcus aureus. However, the structural basis of c-di-AMP specificity within the KdpD-USP domain is not well understood. Here, we resolved a 2.3 Å crystal structure of the S. aureus KdpD-USP domain (USP

Indexed as

Bacterial ProteinsCrystallography, X-RayCyclic AMPHistidine KinaseHumansModels, MolecularProtein ConformationProtein DomainsProtein KinasesSecond Messenger SystemsStaphylococcal InfectionsStaphylococcus aureusBacterial ProteinsCyclic AMPHistidine KinasekdpD protein, BacteriaProtein Kinasesbacterial signal transductionc-di-AMPcrystal structurehistidine kinasemethicillin-resistant Staphylococcus aureusosmoregulationsecond messenger

Identifiers

PMID33989637
PMCPMC8214093
OpenAlexW3161257698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.