Evidence map›Paper›PMID 33989348›Full record

ArticlePloS one2021

Implementation of GeneXpert MTB/Rif proficiency testing program: A Case of the Uganda national tuberculosis reference laboratory/supranational reference laboratory.

Joel Kabugo, Joanita Namutebi, Dennis Mujuni, Andrew Nsawotebba, George William Kasule, Kenneth Musisi, Edgar Kigozi, Abdunoor Nyombi, Pius Lutaaya, Fredrick Kangave and 1 more

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Joel KabugoUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.ORCID 0000-0002-5666-9702
Joanita NamutebiUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.
Dennis MujuniUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.ORCID 0000-0002-7831-2894
Andrew NsawotebbaUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.
George William KasuleUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.ORCID 0000-0002-2123-9614
Kenneth MusisiUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.
Edgar KigoziMakerere University College of Health Sciences, Kampala, Uganda.
Abdunoor NyombiUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.
Pius LutaayaUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.
Fredrick KangaveUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.
Moses L JolobaUganda National Tuberculosis Reference Laboratory, Kampala, Uganda.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFollowing the WHO's endorsement of GeneXpert MTB/RIF assay for tuberculosis diagnosis in 2010, Uganda's ministry of health introduced the assay in its laboratory network in 2012. However, assessing the quality of the result produced from this technique is one of its major implementation challenges. To bridge this gap, the National tuberculosis reference laboratory (NTRL) introduced the GeneXpert MTB/RIF proficiency testing (PT) Scheme in 2015.

methodsA descriptive cross-sectional study on the GeneXpert PT scheme in Uganda was conducted between 2015 and 2018. Sets of panels each comprising four 1ml cryovial liquid samples were sent out to enrolled participants at preset testing periods. The laboratories' testing accuracies were assessed by comparing their reported results to the expected and participants' consensus results. Percentage scores were assigned and feedback reports were sent back to laboratories. Follow up of sites with unsatisfactory results was done through "on and off-site support". Concurrently, standardization of standard operating procedures (SOPs) and practices to the requirements of the International Organization for Standardization (ISO) 17043:2010 was pursued.

resultsParticipants gradually increased during the program from 56 in the pilot study to 148 in Round 4 (2018). Continual participation of a particular laboratory yielded an odd of 2.5 [95% confidence interval (CI), 1.22 to 4.34] times greater for achieving a score of above 80% with each new round it participated. The "on and off-site" support supervision documented improved performance of failing laboratories. Records of GeneXpert MTB/RIF PT were used to achieve accreditation to ISO 17043:2010 in 2018.

conclusionContinued participation in GeneXpert MTB/RIF PT improves testing accuracy of laboratories. Effective implementation of this scheme requires competent human resources, facility and equipment, functional quality management system, and adherence to ISO 17043:2010.

Indexed as

LaboratoriesLaboratory Proficiency TestingCross-Sectional StudiesFemaleHumansMaleMycobacterium tuberculosisPilot ProjectsTuberculosisUganda

Identifiers

PMID33989348
PMCPMC8121318

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.