Evidence map›Paper›PMID 33987752›Full record

ArticleArchives of virology2021

Retrospective surveillance of porcine circovirus 4 in pigs in Inner Mongolia, China, from 2016 to 2018.

Zhuo Ha, Chengdong Yu, Changzhan Xie, Guanyu Wang, Ying Zhang, Pengfei Hao, Jinfeng Li, Zhuoxin Li, Yanwei Li, Fulong Rong and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Zhuo Ha *Institute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.ORCID http://orcid.org/0000-0002-0072-627X
Chengdong Yu *Institute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Changzhan XieInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Guanyu WangHulunbuir Animal Disease Control Center, Hulunbuir, 021000, China.
Ying ZhangCollege of Veterinary Medicine, Jilin University, Changchun, 130012, China.
Pengfei HaoInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Jinfeng LiInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Zhuoxin LiInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Yanwei LiNational Engineering Research Center of Veterinary Biologics, Harbin, 150001, China.
Fulong RongHarbin Pharmaceutical Group Bio-vaccine Co., Ltd, Harbin, 150030, China.
Fulong NanInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
He ZhangInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Xinyu ZhuangInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Yubiao XieInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Ning ShiInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China.
Huijun LuInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China. huijun_lu@126.com.
Ningyi JinInstitute of Military Veterinary medicine, Academy of Military Medical Sciences, Changchun, 130122, China. ningyik@126.com.
Academy of Military Medical Sciences · CNHarbin Electric Corporation (China) · CNHarbin Veterinary Research Institute · CNHulunbuir University · CNJilin University · CN

Funding

National Key Research and Development Program of China 2016YFD0500401National Key Research and Development Program of China 2017YFD0500101
6 · The paper itself

Abstract

A novel circovirus designated "porcine circovirus type 4" (PCV4) was recently reported in pigs with severe clinical disease in Hunan Province, China. Relatively little is known about the molecular epidemiology of this recently discovered virus. In order to assess the prevalence of PCV4 infection in pigs and to analyze its genomic characteristics, 1683 clinical samples were collected in Inner Mongolia, China, from 2016 to 2018. The overall infection rate of PCV4 was 1.6% (27/1683) at the sample level and 21.6% (11/51) at the farm level, with rates ranging from 3.2% (1/31) to 20.0% (6/30) on different PCV4-positive pig farms. In addition, the PCV4 infection rates at both the sample and farm level increased from 2016 to 2018. This also showed that PCV4 was present in pigs in 2016 in China and therefore did not arrive later than this date. Additionally, our findings showed that PCV4 infections had no association with PCV2 or PCV3 infections. We sequenced the complete genomes of three PCV4 strains and found that the PCV4 strains had a high degree of genetic stability but shared less than 80% sequence identity with other circoviruses. We identified six amino acid mutations in the Rep protein and seven in the Cap protein. Phylogenetic analysis based on Cap and Rep sequences confirmed that the PCV4 strains grouped in an independent branch. Our findings provide important information about the prevalence and genetic characteristics of PCV4 strains.

Indexed as

AnimalsChinaCircoviridae InfectionsCircovirusFarmsGenome, ViralGenomicsMolecular EpidemiologyPhylogenyPrevalenceRetrospective StudiesSwineSwine Diseases

Identifiers

PMID33987752
OpenAlexW3162425614

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.