Evidence map›Paper›PMID 33987601›Full record

ArticleJournal of animal science and technology2021

Genetic assessment of BoLA-DRB3 polymorphisms by comparing Bangladesh, Ethiopian, and Korean cattle.

Ayele Mandefro, Tesfaye Sisay, Zewdu Edea, Md Rasel Uzzaman, Kwan-Suk Kim, Hailu Dadi

Open access · goldAbstract read
In one paragraph

Article in Journal of animal science and technology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ayele MandefroDepartment of Biotechnology, Addis Ababa Science and Technology University, Addis Ababa 16417, Ethiopia.ORCID https://orcid.org/0000-0003-0778-6723
Tesfaye SisayInstitute of Biotechnology, Addis Ababa University, Addis Ababa 1176, Ethiopia.ORCID https://orcid.org/0000-0002-4103-5029
Zewdu EdeaDepartment of Animal Science, Chungbuk National University, Cheongju 28644, Korea.ORCID https://orcid.org/0000-0003-2343-4832
Md Rasel UzzamanDepartment of Animal Science, Chungbuk National University, Cheongju 28644, Korea.ORCID https://orcid.org/0000-0002-3525-4794
Kwan-Suk KimDepartment of Animal Science, Chungbuk National University, Cheongju 28644, Korea.ORCID https://orcid.org/0000-0002-5895-4398
Hailu DadiEthiopian Biotechnology Institute, Addis Ababa 5954, Ethiopia.ORCID https://orcid.org/0000-0001-8918-4544
Chungbuk National University · KRAddis Ababa Science and Technology University · ETAddis Ababa University · ET

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Attributable to their major function in pathogen recognition, the use of bovine leukocyte antigens (BoLA) as disease markers in immunological traits in cattle is well established. However, limited report exists on polymorphism of the BoLA gene in zebu cattle breeds by high resolution typing methods. Thus, we used a polymerase chain reaction sequence-based typing (PCR-SBT) method to sequence exon 2 of the BoLA class II DRB3 gene from 100 animals (Boran, n = 13; Sheko, n = 20; Fogera, n = 16; Horro, n = 19), Hanwoo cattle (n = 18) and Bangladesh Red Chittagong zebu (n = 14). Out of the 59 detected alleles, 43 were already deposited under the Immuno Polymorphism Database for major histocompatibility complex (IPD-MHC) while 16 were unique to this study. Assessment of the level of genetic variability at the population and sequence levels with genetic distance in the breeds considered in this study showed that Zebu breeds had a gene diversity score greater than 0.752, nucleotide diversity score greater than 0.152, and mean number of pairwise differences higher than 14, being very comparable to those investigated for other cattle breeds. Regarding neutrality tests analyzed, we investigated that all the breeds except Hanwoo had an excess number of alleles and could be expected from a recent population expansion or genetic hitchhiking. Howbeit, the observed heterozygosity was not significantly (

Indexed as

AllelesBoLA-DRB3Cattle breedsGenetic diversitySequence based typing (SBT)

Identifiers

PMID33987601
PMCPMC8071750
OpenAlexW3133942232

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.