Evidence map›Paper›PMID 33986273›Full record

ArticleNature communications2021

CryoEM structure of the antibacterial target PBP1b at 3.3 Å resolution.

Nathanael A Caveney, Sean D Workman, Rui Yan, Claire E Atkinson, Zhiheng Yu, Natalie C J Strynadka

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Bacterial peptidoglycan as a living polymer.Current opinion in chemical biology · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Nathanael A CaveneyDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0003-4828-3479
Sean D WorkmanDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0001-8807-4466
Rui YanCryoEM Shared Resources, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0002-0167-2816
Claire E AtkinsonDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.
Zhiheng YuCryoEM Shared Resources, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0002-7114-2570
Natalie C J StrynadkaDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada. ncjs@mail.ubc.ca.ORCID 0000-0002-4058-9425
University of British Columbia · CAHoward Hughes Medical Institute · USUniversity of British Columbia Hospital · CA

Funding

CIHRHoward Hughes Medical Institute
6 · The paper itself

Abstract

The pathway for the biosynthesis of the bacterial cell wall is one of the most prolific antibiotic targets, exemplified by the widespread use of β-lactam antibiotics. Despite this, our structural understanding of class A penicillin binding proteins, which perform the last two steps in this pathway, is incomplete due to the inherent difficulty in their crystallization and the complexity of their substrates. Here, we determine the near atomic resolution structure of the 83 kDa class A PBP from Escherichia coli, PBP1b, using cryogenic electron microscopy and a styrene maleic acid anhydride membrane mimetic. PBP1b, in its apo form, is seen to exhibit a distinct conformation in comparison to Moenomycin-bound crystal structures. The work herein paves the way for the use of cryoEM in structure-guided antibiotic development for this notoriously difficult to crystalize class of proteins and their complex substrates.

Indexed as

AcetylglucosamineAldehydesAnti-Bacterial Agentsbeta-LactamsCell WallCryoelectron MicroscopyEscherichia coliEscherichia coli ProteinsMuramic AcidsOligosaccharidesPenicillin-Binding ProteinsPeptidoglycanPeptidoglycan GlycosyltransferaseProtein ConformationProtein DomainsSerine-Type D-Ala-D-Ala CarboxypeptidaseAcetylglucosamineAldehydesAnti-Bacterial Agentsbeta-LactamsEscherichia coli ProteinsmalealdehydemoenomycinMuramic AcidsN-acetylmuramic acidOligosaccharidespenicillin-binding protein 1B, E coliPenicillin-Binding ProteinsPeptidoglycanPeptidoglycan GlycosyltransferaseSerine-Type D-Ala-D-Ala Carboxypeptidase

Identifiers

PMID33986273
PMCPMC8119973
OpenAlexW3160122936

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.