Evidence map›Paper›PMID 33986153›Full record

ArticleScience (New York, N.Y.)2021

A prometastatic splicing program regulated by SNRPA1 interactions with structured RNA elements.

Lisa Fish, Matvei Khoroshkin, Albertas Navickas, Kristle Garcia, Bruce Culbertson, Benjamin Hänisch, Steven Zhang, Hoang C B Nguyen, Larisa M Soto, Maria Dermit and 5 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 73 citations in OpenAlex.

  1. Pooled it
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  11. Epitranscriptomic sculpting: the role of mMedical oncology (Northwood, London, England) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Lisa Fish *Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.ORCID https://orcid.org/0000-0001-9184-0512
Matvei Khoroshkin *Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.ORCID https://orcid.org/0000-0002-1744-6792
Albertas Navickas *Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.ORCID https://orcid.org/0000-0003-0016-2643
Kristle GarciaDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.
Bruce CulbertsonDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.
Benjamin HänischDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.
Steven ZhangDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.
Hoang C B NguyenInstitute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0001-6975-3084
Larisa M SotoDepartment of Human Genetics, McGill University, Montreal, QC H3A 0C7, Canada.ORCID https://orcid.org/0000-0003-4801-8309
Maria DermitCentre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, London EC1M 6BQ, UK.ORCID https://orcid.org/0000-0002-6287-8367
Faraz K MardakhehCentre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, London EC1M 6BQ, UK.ORCID https://orcid.org/0000-0003-3896-0827
Henrik MolinaProteome Resource Center, The Rockefeller University, New York, NY 10065, USA.ORCID https://orcid.org/0000-0001-8950-4990
Claudio AlarcónDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520, USA.ORCID https://orcid.org/0000-0003-2429-1378
Hamed S NajafabadiDepartment of Human Genetics, McGill University, Montreal, QC H3A 0C7, Canada.ORCID https://orcid.org/0000-0003-2735-4231
Hani GoodarziDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA. hani.goodarzi@ucsf.edu.ORCID https://orcid.org/0000-0002-9648-8949
University of California, San Francisco · USMcGill Genome Centre · CAQueen Mary University of London · GBRockefeller University · USUniversity of Pennsylvania · USYale Cancer Center · US

Funding

Molecular and Cellular Mechanisms in CancerT32CA108462 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI · 2004 to 2024
$10.4M
An antisense RNA-mediated regulatory program that drives cancer metastasisR01CA240984 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2019 to 2023
$2.5M
The RNA structural code underlying pathological regulation of RNA splicing in metastasisR01CA244634 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2021 to 2025
$1.8M
Systematic dissection of an aberrant splicing program driving cancer metastasisR00CA194077 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2016 to 2018
$746k
Medical Research Council MR/P009417/1NCI NIH HHS R00 CA194077NCI NIH HHS R01 CA240984NCI NIH HHS R01 CA244634NCI NIH HHS T32 CA108462
6 · The paper itself

Abstract

Aberrant alternative splicing is a hallmark of cancer, yet the underlying regulatory programs that control this process remain largely unknown. Here, we report a systematic effort to decipher the RNA structural code that shapes pathological splicing during breast cancer metastasis. We discovered a previously unknown structural splicing enhancer that is enriched near cassette exons with increased inclusion in highly metastatic cells. We show that the spliceosomal protein small nuclear ribonucleoprotein polypeptide A' (SNRPA1) interacts with these enhancers to promote cassette exon inclusion. This interaction enhances metastatic lung colonization and cancer cell invasion, in part through SNRPA1-mediated regulation of

Indexed as

Alternative SplicingAdaptor Proteins, Signal TransducingAlgorithmsAnimalsBinding SitesBreast NeoplasmsCell Line, TumorDisease ProgressionExonsGene Knockdown TechniquesHumansLung NeoplasmsMiceMice, Inbred NODMice, SCIDNeoplasm InvasivenessAdaptor Proteins, Signal TransducingERRFI1 protein, humanPlectinRibonucleoprotein, U2 Small NuclearRNARNA, Small NuclearSNRPA1 protein, humanTumor Suppressor ProteinsU2 small nuclear RNA

Identifiers

PMID33986153
PMCPMC8238114
OpenAlexW3162971530

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.