Evidence map›Paper›PMID 33985526›Full record

ArticleMicrobial cell factories2021

Combining transposon mutagenesis and reporter genes to identify novel regulators of the topA promoter in Streptomyces.

Martyna Gongerowska-Jac, Marcin Jan Szafran, Dagmara Jakimowicz

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Uncovering virulence factors inApplied and environmental microbiology · 2023
    Article
  2. Article
  3. Article
  4. Screening transcriptional connections inMicrobiology (Reading, England) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Martyna Gongerowska-JacFaculty of Biotechnology, University of Wroclaw, Wroclaw, Poland. martyna.gongerowska-jac@uwr.edu.pl.ORCID http://orcid.org/0000-0002-3395-6610
Marcin Jan SzafranFaculty of Biotechnology, University of Wroclaw, Wroclaw, Poland.
Dagmara JakimowiczFaculty of Biotechnology, University of Wroclaw, Wroclaw, Poland.
University of Wrocław · PL

Funding

Narodowe Centrum Nauki 2016/23/N/NZ2/01169
6 · The paper itself

Abstract

backgroundIdentifying the regulatory factors that control transcriptional activity is a major challenge of gene expression studies. Here, we describe the application of a novel approach for in vivo identification of regulatory proteins that may directly or indirectly control the transcription of a promoter of interest in Streptomyces.

resultsA method based on the combination of Tn5 minitransposon-driven random mutagenesis and lux reporter genes was applied for the first time for the Streptomyces genus. As a proof of concept, we studied the topA supercoiling-sensitive promoter, whose activity is dependent on unknown regulatory factors. We found that the sco4804 gene product positively influences topA transcription in S. coelicolor, demonstrating SCO4804 as a novel player in the control of chromosome topology in these bacteria.

conclusionsOur approach allows the identification of novel Streptomyces regulators that may be critical for the regulation of gene expression in these antibiotic-producing bacteria.

Indexed as

Gene Expression Regulation, BacterialGenes, ReporterPromoter Regions, GeneticBacterial ProteinsDNA Transposable ElementsMutagenesis, InsertionalProof of Concept StudyStreptomycesBacterial ProteinsDNA Transposable ElementsLux reporter geneStreptomycesTopATranscription regulationTransposon mutagenesis

Identifiers

PMID33985526
PMCPMC8120823
OpenAlexW3162804250

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.