Evidence map›Paper›PMID 33984576›Full record

ArticleEnvironment international2021

Prioritizing cancer hazard assessments for IARC Monographs using an integrated approach of database fusion and text mining.

Dinesh Kumar Barupal, Mary K Schubauer-Berigan, Michael Korenjak, Jiri Zavadil, Kathryn Z Guyton

Abstract read
In one paragraph

Article in Environment international, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. Article
  7. CarD-T: Interpreting Carcinomic Lexicon via Transformers.medRxiv : the preprint server for health sciences · 2024
    Article
  8. Article
  9. Review
  10. A Narrative Literature Review of Natural Language Processing Applied to the Occupational Exposome.International journal of environmental research and public health · 2022
    Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dinesh Kumar BarupalDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mt Sinai, NY, USA. Electronic address: dinesh.kumar@mssm.edu.
Mary K Schubauer-BeriganEvidence Synthesis and Classification Branch, International Agency for Research on Cancer, Lyon, France.
Michael KorenjakEpigenomics and Mechanisms Branch, International Agency for Research on Cancer, Lyon, France.
Jiri ZavadilEpigenomics and Mechanisms Branch, International Agency for Research on Cancer, Lyon, France.
Kathryn Z GuytonEvidence Synthesis and Classification Branch, International Agency for Research on Cancer, Lyon, France.

Funding

EVALUATION OF CARCINOGENIC RISKS TO HUMANSU01CA033193 · NCI · INTERNATIONAL AGENCY FOR RES ON CANCER · PI SCHUBAUER-BERIGAN, MARY K. · 1985 to 2020
$16.5M
NCI NIH HHS U01 CA033193World Health Organization 001
6 · The paper itself

Abstract

backgroundSystematic evaluation of literature data on the cancer hazards of human exposures is an essential process underlying cancer prevention strategies. The scope and volume of evidence for suspected carcinogens can range from very few to thousands of publications, requiring a complex, systematically planned, and critical procedure to nominate, prioritize and evaluate carcinogenic agents. To aid in this process, database fusion, cheminformatics and text mining techniques can be combined into an integrated approach to inform agent prioritization, selection, and grouping.

resultsWe have applied these techniques to agents recommended for the IARC Monographs evaluations during 2020-2024. An integration of PubMed filters to cover cancer epidemiology, key characteristics of carcinogens, chemical lists from 34 databases relevant for cancer research, chemical structure grouping and a literature data-based clustering was applied in an innovative approach to 119 agents recommended by an advisory group for future IARC Monographs evaluations. The approach also facilitated a rational grouping of these agents and aids in understanding the volume and complexity of relevant information, as well as important gaps in coverage of the available studies on cancer etiology and carcinogenesis.

conclusionA new data-science approach has been applied to diverse agents recommended for cancer hazard assessments, and its applications for the IARC Monographs are demonstrated. The prioritization approach has been made available at www.cancer.idsl.me site for ranking cancer agents.

Indexed as

NeoplasmsCarcinogenesisCarcinogensDatabases, FactualData MiningHumansCarcinogensChemoinformaticsDatabase fusionHazard identificationIARC MonographsText mining

Identifiers

PMID33984576
PMCPMC8380673

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.