Evidence map›Paper›PMID 33984072›Full record

ReviewPLoS pathogens2021

Emerging and divergent roles of pyrophosphorylated nucleotides in bacterial physiology and pathogenesis.

N Y Elizabeth Chau, Shehryar Ahmad, John C Whitney, Brian K Coombes

Open access · goldAbstract readReview
In one paragraph

Review in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. (p)ppGpp is required for virulence ofInfection and immunity · 2024
    Article
  11. Basal level of ppGpp coordinatesMicrobial cell (Graz, Austria) · 2023
    Article
  12. Article
  13. Identification of a broadly conserved family of enzymes that hydrolyze (p)ppApp.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Review
  15. Survival ofFrontiers in microbiology · 2023
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

N Y Elizabeth ChauDepartment of Biochemistry & Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0002-7146-8845
Shehryar AhmadDepartment of Biochemistry & Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0002-2747-5212
John C WhitneyDepartment of Biochemistry & Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0002-4517-8836
Brian K CoombesDepartment of Biochemistry & Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0001-9883-1010
McMaster University · CA

Funding

CIHR PJT-156129CIHR PJT-156361
6 · The paper itself

Abstract

Bacteria inhabit diverse environmental niches and consequently must modulate their metabolism to adapt to stress. The nucleotide second messengers guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate (pppGpp) (collectively referred to as (p)ppGpp) are essential for survival during nutrient starvation. (p)ppGpp is synthesized by the RelA-SpoT homologue (RSH) protein family and coordinates the control of cellular metabolism through its combined effect on over 50 proteins. While the role of (p)ppGpp has largely been associated with nutrient limitation, recent studies have shown that (p)ppGpp and related nucleotides have a previously underappreciated effect on different aspects of bacterial physiology, such as maintaining cellular homeostasis and regulating bacterial interactions with a host, other bacteria, or phages. (p)ppGpp produced by pathogenic bacteria facilitates the evasion of host defenses such as reactive nitrogen intermediates, acidic pH, and the complement system. Additionally, (p)ppGpp and pyrophosphorylated derivatives of canonical adenosine nucleotides called (p)ppApp are emerging as effectors of bacterial toxin proteins. Here, we review the RSH protein family with a focus on its unconventional roles during host infection and bacterial competition.

Indexed as

Bacterial Physiological PhenomenaStress, PhysiologicalAnimalsBacteriaBacterial InfectionsBacterial ProteinsDiphosphatesGene Expression Regulation, BacterialHumansNucleotidesPhosphorylationBacterial ProteinsDiphosphatesNucleotides

Identifiers

PMID33984072
PMCPMC8118318
OpenAlexW3162066309

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.