Evidence map›Paper›PMID 33982894›Full record

ArticleArthritis & rheumatology (Hoboken, N.J.)2021

Lupus Susceptibility Region Containing CDKN1B rs34330 Mechanistically Influences Expression and Function of Multiple Target Genes, Also Linked to Proliferation and Apoptosis.

Bhupinder Singh, Guru P Maiti, Xujie Zhou, Mehdi Fazel-Najafabadi, Sang-Cheol Bae, Celi Sun, Chikashi Terao, Yukinori Okada, Kek Heng Chua, Yuta Kochi and 8 more

Open access · greenAbstract read
In one paragraph

Article in Arthritis & rheumatology (Hoboken, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Annals of the rheumatic diseases · 2024
    Article
  6. Article
  7. A Non-Coding Variant inFrontiers in lupus · 2023
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 5 countries.

Bhupinder SinghOklahoma Medical Research Foundation, Oklahoma City.
Guru P MaitiOklahoma Medical Research Foundation, Oklahoma City.
Xujie ZhouPeking University First Hospital, Peking University, Ministry of Health of China, Beijing, China.
Mehdi Fazel-NajafabadiOklahoma Medical Research Foundation, Oklahoma City.ORCID 0000-0002-7979-758X
Sang-Cheol BaeHanyang University Hospital for Rheumatic Diseases, Seoul, Republic of Korea.ORCID 0000-0003-4658-1093
Celi SunOklahoma Medical Research Foundation, Oklahoma City.
Chikashi TeraoRIKEN Center for Integrative Medical Sciences, RIKEN Yokohama Campus, Yokohama, Japan, and University of Shizuoka, Shizuoka, Japan.
Yukinori OkadaOsaka University, Osaka, Japan.ORCID 0000-0002-0311-8472
Kek Heng ChuaUniversity of Malaya, Kuala Lumpur, Malaysia.
Yuta KochiTokyo Medical and Dental University, RIKEN Center for Integrative Medical Sciences, RIKEN Yokohama Campus, Yokohama, Japan.
Joel M GuthridgeOklahoma Medical Research Foundation, Oklahoma City.
Hong ZhangPeking University First Hospital, Peking University, Ministry of Health of China, Beijing, China.
Matthew WeirauchCincinnati Children's Hospital Medical Center, University of Cincinnati, and Cincinnati VA Medical Center, Cincinnati, Ohio, USA.
Judith A JamesOklahoma Medical Research Foundation, Oklahoma City.ORCID 0000-0002-9574-7355
John B HarleyCincinnati Children's Hospital Medical Center, University of Cincinnati, and Cincinnati VA Medical Center, Cincinnati, Ohio, USA.
Gaurav K VarshneyOklahoma Medical Research Foundation, Oklahoma City.
Loren L LoogerHoward Hughes Medical Institute, Janelia Research Campus, Ashburn, Virginia, USA.
Swapan K NathOklahoma Medical Research Foundation, Oklahoma City.ORCID 0000-0001-6013-9328
Oklahoma Medical Research Foundation · USCincinnati Children's Hospital Medical Center · USPeking University · CNHanyang University Seoul Hospital · KRHoward Hughes Medical Institute · USThe University of Osaka · JPTokyo Medical and Dental University · JPUniversity of Malaya · MYUniversity of Shizuoka · JP

Funding

Oklahoma Rheumatic Disease Research Cores Center (Overall Application)P30AR073750 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JUDITH A JAMES · 2018 to 2026
$8.5M
HLA GENE COMPLEMENTATION IN PRIMARY SJOGREN'S AND LUPUSR01AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KOTTYAN, LEAH CLAIRE, WEIRAUCH, MATTHEW TYSON · 1987 to 2025
$7.8M
SLE Susceptibility and Clinical Significance at 2q22-24 across Multiple EthnicitiR01AR060366 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI NATH, SWAPAN K. · 2010 to 2019
$3.3M
Ikaros family genes and lupus susceptibility across ethnically diverse populationsR01AI132532 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GUTHRIDGE, JOEL MARVIN, NATH, SWAPAN K. · 2018 to 2021
$3.2M
Role of Two Interferon Regulatory Genes in LupusR21AI144829 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI NATH, SWAPAN K. · 2020 to 2021
$481k
National Institute of Allergy and Infectious Diseases R01AI132532National Institute of Allergy and Infectious Diseases R21AI144829National Research Foundation NRF-2017M3A9B4050335NIAID NIH HHS R01 AI024717NIAID NIH HHS R01 AI132532NIAID NIH HHS R21 AI144829NIAMS NIH HHS P30 AR073750NIAMS NIH HHS P30AR073750NIAMS NIH HHS R01 AR060366NIAMS NIH HHS R01AR060366
6 · The paper itself

Abstract

objectiveIn a recent genome-wide association study, a significant genetic association between rs34330 of CDKN1B and risk of systemic lupus erythematosus (SLE) in Han Chinese was identified. This study was undertaken to validate the reported association and elucidate the biochemical mechanisms underlying the effect of the variant.

methodsWe performed an allelic association analysis in patients with SLE, followed by a meta-analysis assessing genome-wide association data across 11 independent cohorts (n = 28,872). In silico bioinformatics analysis and experimental validation in SLE-relevant cell lines were applied to determine the functional consequences of rs34330.

resultsWe replicated a genetic association between SLE and rs34330 (meta-analysis P = 5.29 × 10

conclusionCollectively, these findings suggest a mechanism whereby the rs34330 risk allele (C) influences the presence of histone marks, RNA Pol II, and IRF-1 transcription factor to regulate expression of several target genes linked to proliferation and apoptosis. This process could potentially underlie the association of rs34330 with SLE.

Indexed as

Polymorphism, Single NucleotideAllelesApoptosisCell ProliferationComputational BiologyCyclin-Dependent Kinase Inhibitor p27Genetic Predisposition to DiseaseGenome-Wide Association StudyHumansLupus Erythematosus, SystemicPromoter Regions, GeneticCyclin-Dependent Kinase Inhibitor p27

Identifiers

PMID33982894
PMCPMC8589926
OpenAlexW3160124417

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.