Evidence map›Paper›PMID 33982054›Full record

ArticleJournal of industrial microbiology & biotechnology2021

Discovery of ammosesters by mining the Streptomyces uncialis DCA2648 genome revealing new insight into ammosamide biosynthesis.

Jun Luo, Dong Yang, Hindra, Ajeeth Adhikari, Liao-Bin Dong, Fei Ye, Xiaohui Yan, Christoph Rader, Ben Shen

Abstract read
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Unexpected Transformations during Pyrroloiminoquinone Biosynthesis.Journal of the American Chemical Society · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jun LuoDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0002-7892-011X
Dong YangDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0003-2917-0663
HindraDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.
Ajeeth AdhikariDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.
Liao-Bin DongDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.
Fei YeDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.
Xiaohui YanDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0001-7295-8902
Christoph RaderDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0001-9955-3454
Ben ShenDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA.ORCID 0000-0002-9750-5982

Funding

Mining Actinomycetal Genomes for Natural Product Discovery and BiosynthesisR35GM134954 · NIGMS · UNIVERSITY OF FLORIDA · PI Ben Shen · 2020 to 2026
$5.1M
Novel Enediyne-Based Antibody-Drug Conjugates for CancersR01CA204484 · NCI · UNIVERSITY OF FLORIDA · PI Natarajan Muthusamy, Ben Shen · 2017 to 2026
$4.6M
NCI NIH HHS R01 CA204484NIGMS NIH HHS R35 GM134954
6 · The paper itself

Abstract

The ammosamides (AMMs) are a family of pyrroloquinoline alkaloids that exhibits a wide variety of bioactivities. A biosynthetic gene cluster (BGC) that is highly homologous in both gene content and genetic organization to the amm BGC was identified by mining the Streptomyces uncialis DCA2648 genome, leading to the discovery of a sub-family of new AMM congeners, named ammosesters (AMEs). The AMEs feature a C-4a methyl ester, differing from the C-4a amide functional group characteristic to AMMs, and exhibit modest cytotoxicity against a broad spectrum of human cancer cell lines, expanding the structure-activity relationship for the pyrroloquinoline family of natural products. Comparative analysis of the ame and amm BGCs supports the use of a scaffold peptide as an emerging paradigm for the biosynthesis of the pyrroloquinoline family of natural products. AME and AMM biosynthesis diverges from a common intermediate by evolving the pathway-specific Ame24 O-methyltransferase and Amm20 amide synthetase, respectively. These findings will surely inspire future efforts to mimic Nature's combinatorial biosynthetic strategies for natural product structural diversity.

Indexed as

Genome, BacterialAmidesBiological ProductsHumansMultigene FamilyPyrrolesQuinolinesStreptomycesAmidesBiological ProductsPyrrolespyrroloquinolineQuinolinesAmmosamideAmmosesterBiosynthesisGenome miningStreptomyces uncialis

Identifiers

PMID33982054
PMCPMC8210675

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.