Evidence map›Paper›PMID 33981820›Full record

ArticleData in brief2021

Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India.

Meenakshi Mukhopadhyay, Arup Kumar Mitra, Sudeshna Shyam Choudhury, Sayak Ganguli

Abstract read
In one paragraph

Article in Data in brief, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Meenakshi MukhopadhyayDepartment of Botany, Vivekananda College, 269, Diamond Harbour Road, Kolkata, West Bengal 700063, India.
Arup Kumar MitraPost Graduate Department of Microbiology, St. Xavier's College (Autonomous), 30 Mother Teresa Sarani (Park Street), Kolkata, West Bengal 700016, India.
Sudeshna Shyam ChoudhuryPost Graduate Department of Microbiology, St. Xavier's College (Autonomous), 30 Mother Teresa Sarani (Park Street), Kolkata, West Bengal 700016, India.
Sayak GanguliPost Graduate Department of Biotechnology, St. Xavier's College (Autonomous), 30 Mother Teresa Sarani (Park Street), Kolkata, West Bengal 700016, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The data represents the bacterial community profile obtained through metagenomic sequencing of soil sample, collected from the 'Rarh' region of West Bengal, which is characterized by the lateritic badlands dating back to the late Pleistocene. Taxonomic binning and operational taxonomic unit (OTU) prediction of the Illumina sequencing data indicated the abundance Proteobacteria (61%) followed closely by Bacterioidetes (35%). The top two most abundant genera identified, were Sphingobacterium and Acinetobacter respectively. Chemical properties of soil, such as pH, organic carbon content, available nitrogen, phosphorus, and potassium were also analyzed for enabling future researchers to correlate the abundance of microbial taxa with the prevalent conditions. These findings can be effectively used to formulate strategic microbiome engineering through bioaugmentation for a sustainable agricultural system.

Indexed as

IlluminaLateritic soilMetagenomic profileProteobacteriaSustainable agriculture

Identifiers

PMID33981820
PMCPMC8086014

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.