Evidence map›Paper›PMID 33980829›Full record

ArticleNature communications2021

INI1/SMARCB1 Rpt1 domain mimics TAR RNA in binding to integrase to facilitate HIV-1 replication.

Updesh Dixit, Savita Bhutoria, Xuhong Wu, Liming Qiu, Menachem Spira, Sheeba Mathew, Richard Harris, Lucas J Adams, Sean Cahill, Rajiv Pathak and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Mapping the vRNA Interaction with HIV-1 Integrase.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. A CRISPR screen of HIV dependency factors revealsbioRxiv : the preprint server for biology · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Updesh Dixit *Department of Genetics, Albert Einstein College of Medicine, New York City, NY, USA.
Savita Bhutoria *Department of Genetics, Albert Einstein College of Medicine, New York City, NY, USA.
Xuhong WuDepartment of Genetics, Albert Einstein College of Medicine, New York City, NY, USA.
Liming QiuDalton Cardiovascular Research Center, Department of Physics and Astronomy, Department of Biochemistry, and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.ORCID 0000-0003-3098-5245
Menachem SpiraDepartment of Genetics, Albert Einstein College of Medicine, New York City, NY, USA.
Sheeba MathewDepartment of Genetics, Albert Einstein College of Medicine, New York City, NY, USA.
Richard HarrisDepartment of Biochemistry, Albert Einstein College of Medicine, New York City, NY, USA.
Lucas J AdamsLaboratory of Structural Biology Research, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, USA.
Sean CahillDepartment of Biochemistry, Albert Einstein College of Medicine, New York City, NY, USA.ORCID 0000-0003-2877-0704
Rajiv PathakDepartment of Genetics, Albert Einstein College of Medicine, New York City, NY, USA.
P Rajesh KumarDepartment of Biochemistry, Albert Einstein College of Medicine, New York City, NY, USA.
Minh NguyenDepartment of Genetics, Albert Einstein College of Medicine, New York City, NY, USA.
Seetharama A AcharyaDepartment of Anatomy & Structural Biology, Albert Einstein College of Medicine, New York, NY, USA.
Michael BrenowitzDepartment of Biochemistry, Albert Einstein College of Medicine, New York City, NY, USA.ORCID 0000-0003-0048-1716
Steven C AlmoDepartment of Biochemistry, Albert Einstein College of Medicine, New York City, NY, USA.
Xiaoqin ZouDalton Cardiovascular Research Center, Department of Physics and Astronomy, Department of Biochemistry, and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.ORCID 0000-0003-0637-8648
Alasdair C StevenLaboratory of Structural Biology Research, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-4104-6497
David CowburnDepartment of Biochemistry, Albert Einstein College of Medicine, New York City, NY, USA.
Mark GirvinDepartment of Biochemistry, Albert Einstein College of Medicine, New York City, NY, USA.
Ganjam V KalpanaDepartment of Genetics, Albert Einstein College of Medicine, New York City, NY, USA. ganjam.kalpana@einsteinmed.org.ORCID 0000-0003-4111-0604

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI STEVEN C. ALMO · 1985 to 2026
$111.2M
Patient and Population Health Outcomes Research SWGP30AI124414 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Kathryn M. Anastos · 2017 to 2026
$28.3M
Training in HIV/AIDS Pathogenesis; Basic and Translational ResearchT32AI007501 · NIAID · YESHIVA UNIVERSITY · PI PRASAD, VINAYAKA R. · 1995 to 2024
$6.6M
900 MHz NMR Spectrometer for Structural BiologyP41GM066354 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI COWBURN, DAVID · 2002 to 2006
$4.7M
Structure prediction and in silico screening of protein-peptide interactionsR35GM136409 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI XIAOQIN ZOU · 2020 to 2026
$2.9M
Integrase Binding Proteins as Drug Targets to Inhibit HIV-1 AssemblyR01GM112520 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI KALPANA, GANJAM V · 2014 to 2017
$1.6M
Database and software development for protein-nucleic acid structure predicationR01GM109980 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI ZOU, XIAOQIN · 2015 to 2019
$1.5M
Console and probe upgrade for 600 MHz NMRS10OD016305 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI COWBURN, DAVID · 2014 to 2014
$595k
120kV Transmission Electron Microscope for a Multi-user Microscopy FacilityS10OD016214 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CONDEELIS, JOHN S · 2014 to 2014
$459k
NCI NIH HHS P30 CA013330NIAID NIH HHS P30 AI124414NIAID NIH HHS T32 AI007501NIGMS NIH HHS P41 GM066354NIGMS NIH HHS R01 GM109980NIGMS NIH HHS R01 GM112520NIGMS NIH HHS R35 GM136409NIH HHS S10 OD016214NIH HHS S10 OD016305
6 · The paper itself

Abstract

INI1/SMARCB1 binds to HIV-1 integrase (IN) through its Rpt1 domain and exhibits multifaceted role in HIV-1 replication. Determining the NMR structure of INI1-Rpt1 and modeling its interaction with the IN-C-terminal domain (IN-CTD) reveal that INI1-Rpt1/IN-CTD interface residues overlap with those required for IN/RNA interaction. Mutational analyses validate our model and indicate that the same IN residues are involved in both INI1 and RNA binding. INI1-Rpt1 and TAR RNA compete with each other for IN binding with similar IC

Indexed as

Virus ReplicationGenome, ViralHIV-1HIV IntegraseHost-Pathogen InteractionsHumansMagnetic Resonance SpectroscopyModels, MolecularMolecular Docking SimulationProtein BindingProtein DomainsRNA, ViralSMARCB1 ProteinVirionHIV Integrasep31 integrase protein, Human immunodeficiency virus 1RNA, ViralSMARCB1 ProteinSMARCB1 protein, human

Identifiers

PMID33980829
PMCPMC8115288

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.