Evidence map›Paper›PMID 33979351›Full record

ArticlePLoS neglected tropical diseases2021

A novel genotype of Hantaan orthohantavirus harbored by Apodemus agrarius chejuensis as a potential etiologic agent of hemorrhagic fever with renal syndrome in Republic of Korea.

Kyungmin Park, Won-Keun Kim, Seung-Ho Lee, Jongwoo Kim, Jingyeong Lee, Seungchan Cho, Geum-Young Lee, Jin Sun No, Keun Hwa Lee, Jin-Won Song

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Kyungmin ParkBK21 Graduate Program, Department of Biomedical Sciences, Korea University College of Medicine, Seoul, Republic of Korea.ORCID 0000-0002-2132-0674
Won-Keun KimDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Seung-Ho LeeDepartment of Microbiology, Korea University College of Medicine, Seoul, Republic of Korea.ORCID 0000-0002-7840-422X
Jongwoo KimDepartment of Microbiology, Korea University College of Medicine, Seoul, Republic of Korea.
Jingyeong LeeDepartment of Microbiology, Korea University College of Medicine, Seoul, Republic of Korea.
Seungchan ChoDepartment of Microbiology, Korea University College of Medicine, Seoul, Republic of Korea.
Geum-Young LeeDepartment of Microbiology, Korea University College of Medicine, Seoul, Republic of Korea.
Jin Sun NoDepartment of Microbiology, Korea University College of Medicine, Seoul, Republic of Korea.ORCID 0000-0003-4400-7872
Keun Hwa LeeDepartment of Microbiology, College of Medicine, Hanyang University, Seoul, Republic of Korea.ORCID 0000-0001-9600-461X
Jin-Won SongBK21 Graduate Program, Department of Biomedical Sciences, Korea University College of Medicine, Seoul, Republic of Korea.ORCID 0000-0003-3178-8569
Korea University · KRHallym University · KRHanyang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOrthohantaviruses, causing hemorrhagic fever with renal syndrome (HFRS) and hantavirus cardiopulmonary syndrome, pose a significant public health threat worldwide. Despite the significant mortality and morbidity, effective antiviral therapeutics for orthohantavirus infections are currently unavailable. This study aimed to investigate the prevalence of HFRS-associated orthohantaviruses and identify the etiological agent of orthohantavirus outbreaks in southern Republic of Korea (ROK). METHODOLOGY/PRINCIPAL

findingsWe collected small mammals on Jeju Island during 2018-2020. We detected the Hantaan virus (HTNV)-specific antibodies and RNA using an indirect immunofluorescence assay test and reverse transcription-polymerase chain reaction on Apodemus agrarius chejuensis (A. chejuensis). The prevalence of anti-HTNV antibodies among rodents was 14.1%. A total of six seropositive mouse harbored HTNV RNA. The amplicon-based next-generation sequencing provided nearly full-length tripartite genomic sequences of six HTNV harbored by A. chejuensis. Phylogenetic and tanglegram analyses were conducted for inferring evolutionary relationships between orthohantaviruses with their reservoir hosts. Phylogenetic analysis showed a novel distinct HTNV genotype. The detected HTNV genomic sequences were phylogenetically related to a viral sequence derived from HFRS patient in southern ROK. Tanglegram analysis demonstrated the segregation of HTNV genotypes corresponding to Apodemus spp. divergence. CONCLUSIONS/SIGNIFICANCE: Our results suggest that A. chejuensis-borne HTNV may be a potential etiological agent of HFRS in southern ROK. Ancestral HTNV may infect A. chejuensis prior to geological isolation between the Korean peninsula and Jeju Island, supporting the co-evolution of orthohantaviruses and rodents. This study arises awareness among physicians for HFRS outbreaks in southern ROK.

Indexed as

AnimalsAntibodies, ViralHantaan virusHemorrhagic Fever with Renal SyndromeMurinaePhylogenyRepublic of KoreaReverse Transcriptase Polymerase Chain ReactionRodentiaShrewsAntibodies, Viral

Identifiers

PMID33979351
PMCPMC8143423
OpenAlexW3160107858

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.