Evidence map›Paper›PMID 33979149›Full record

ReviewChemical reviews2021

Quantum Chemistry Calculations for Metabolomics.

Ricardo M Borges, Sean M Colby, Susanta Das, Arthur S Edison, Oliver Fiehn, Tobias Kind, Jesi Lee, Amy T Merrill, Kenneth M Merz, Thomas O Metz and 5 more

Abstract readReview
In one paragraph

Review in Chemical reviews, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Studying the Intrinsic Reactivity of Chromanes by Gas-Phase Infrared Spectroscopy.Journal of the American Society for Mass Spectrometry · 2024
    Article
  12. Article
  13. Review
  14. Article
  15. Mlp4green: A Binary Classification Approach Specifically for Green Odor.International journal of molecular sciences · 2024
    Article
  16. Review
  17. Review
  18. AnAnalytical chemistry · 2023
    Article
  19. Review
  20. Advances in Microbial NMR Metabolomics.Advances in experimental medicine and biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ricardo M BorgesWalter Mors Institute of Research on Natural Products, Federal University of Rio de Janeiro, Rio de Janeiro 21941-901, Brazil.ORCID 0000-0002-7662-6734
Sean M ColbyBiological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.ORCID 0000-0002-3193-8267
Susanta DasDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-7981-5162
Arthur S EdisonDepartments of Genetics and Biochemistry and Molecular Biology, Complex Carbohydrate Research Center and Institute of Bioinformatics, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0002-5686-2350
Oliver FiehnWest Coast Metabolomics Center for Compound Identification, UC Davis Genome Center, University of California, Davis, California 95616, United States.ORCID 0000-0002-6261-8928
Tobias KindWest Coast Metabolomics Center for Compound Identification, UC Davis Genome Center, University of California, Davis, California 95616, United States.ORCID 0000-0002-1908-4916
Jesi LeeWest Coast Metabolomics Center for Compound Identification, UC Davis Genome Center, University of California, Davis, California 95616, United States.ORCID 0000-0002-2063-4743
Amy T MerrillDepartment of Chemistry, University of California, Davis, California 95616, United States.ORCID 0000-0003-4801-1721
Kenneth M MerzDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-9139-5893
Thomas O MetzBiological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.ORCID 0000-0001-6049-3968
Jamie R NunezBiological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.ORCID 0000-0002-8594-1648
Dean J TantilloDepartment of Chemistry, University of California, Davis, California 95616, United States.ORCID 0000-0002-2992-8844
Lee-Ping WangDepartment of Chemistry, University of California, Davis, California 95616, United States.
Shunyang WangWest Coast Metabolomics Center for Compound Identification, UC Davis Genome Center, University of California, Davis, California 95616, United States.ORCID 0000-0003-3072-9946
Ryan S RenslowBiological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.ORCID 0000-0002-3969-5570

Funding

Pacific Northwest Advanced Compound Identification CoreU2CES030170 · NIEHS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI METZ, THOMAS O · 2018 to 2021
$4.6M
Portal for Open Computational Metabolomics Tools - Yr 4 U2C SupplementU2CES030167 · NIEHS · UNIVERSITY OF GEORGIA · PI MCINTYRE, LAUREN M. · 2018 to 2021
$4.2M
West Coast Metabolomics Center for Compound IdentificationU2CES030158 · NIEHS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FIEHN, OLIVER · 2018 to 2021
$4.1M
NIEHS NIH HHS U2C ES030158NIEHS NIH HHS U2C ES030167NIEHS NIH HHS U2C ES030170
6 · The paper itself

Abstract

A primary goal of metabolomics studies is to fully characterize the small-molecule composition of complex biological and environmental samples. However, despite advances in analytical technologies over the past two decades, the majority of small molecules in complex samples are not readily identifiable due to the immense structural and chemical diversity present within the metabolome. Current gold-standard identification methods rely on reference libraries built using authentic chemical materials ("standards"), which are not available for most molecules. Computational quantum chemistry methods, which can be used to calculate chemical properties that are then measured by analytical platforms, offer an alternative route for building reference libraries,

Indexed as

MetabolomicsQuantum Theory

Identifiers

PMID33979149
PMCPMC8161423

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.