Evidence map›Paper›PMID 33978236›Full record

ArticleThe EMBO journal2021

Widespread displacement of DNA- and RNA-binding factors underlies toxicity of arginine-rich cell-penetrating peptides.

Vanesa Lafarga, Oleksandra Sirozh, Irene Díaz-López, Antonio Galarreta, Misaru Hisaoka, Eduardo Zarzuela, Jasminka Boskovic, Bogdan Jovanovic, Rafael Fernandez-Leiro, Jaime Muñoz and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Vanesa LafargaGenomic Instability Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
Oleksandra SirozhGenomic Instability Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
Irene Díaz-LópezCentro de Biología Molecular 'Severo Ochoa' (CSIC-UAM), Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), Madrid, Spain.
Antonio GalarretaGenomic Instability Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.ORCID 0000-0003-2358-7927
Misaru HisaokaDivision of Biochemistry, Mannheim Institute for Innate Immunoscience (MI3), Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Eduardo ZarzuelaProteoRed-ISCIII, Proteomics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
Jasminka BoskovicElectron Microscopy Unit, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
Bogdan JovanovicDivision of Biochemistry, Mannheim Institute for Innate Immunoscience (MI3), Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Rafael Fernandez-LeiroGenomic Integrity and Structural Biology Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.ORCID 0000-0002-7941-0357
Jaime MuñozProteoRed-ISCIII, Proteomics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
Georg StoecklinDivision of Biochemistry, Mannheim Institute for Innate Immunoscience (MI3), Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.ORCID 0000-0001-9284-9834
Iván VentosoCentro de Biología Molecular 'Severo Ochoa' (CSIC-UAM), Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), Madrid, Spain.
Oscar Fernandez-CapetilloGenomic Instability Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.ORCID 0000-0002-2690-6885
Spanish National Cancer Research Centre · ESUniversity of Mannheim · DECentro de Biología Molecular Severo Ochoa · ESScience for Life Laboratory · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Due to their capability to transport chemicals or proteins into target cells, cell-penetrating peptides (CPPs) are being developed as therapy delivery tools. However, and despite their interesting properties, arginine-rich CPPs often show toxicity for reasons that remain poorly understood. Using a (PR)n dipeptide repeat that has been linked to amyotrophic lateral sclerosis (ALS) as a model of an arginine-rich CPP, we here show that the presence of (PR)n leads to a generalized displacement of RNA- and DNA-binding proteins from chromatin and mRNA. Accordingly, any reaction involving nucleic acids, such as RNA transcription, translation, splicing and degradation, or DNA replication and repair, is impaired by the presence of the CPPs. Interestingly, the effects of (PR)n are fully mimicked by protamine, a small arginine-rich protein that displaces histones from chromatin during spermatogenesis. We propose that widespread coating of nucleic acids and consequent displacement of RNA- and DNA-binding factors from chromatin and mRNA accounts for the toxicity of arginine-rich CPPs, including those that have been recently associated with the onset of ALS.

Indexed as

Amyotrophic Lateral SclerosisArginineCell Line, TumorCell-Penetrating PeptidesChromatinDNADNA-Binding ProteinsHeLa CellsHistonesHumansNucleic AcidsRNARNA-Binding ProteinsRNA, MessengerRNA SplicingSpermatogenesisArginineCell-Penetrating PeptidesChromatinDNADNA-Binding ProteinsHistonesNucleic AcidsRNARNA-Binding ProteinsRNA, MessengerALSarginine-rich peptideschromatinmRNAprotamine

Identifiers

PMID33978236
PMCPMC8246256
OpenAlexW3162065598

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.