Evidence map›Paper›PMID 33977973›Full record

ArticleChemical communications (Cambridge, England)2021

Small molecule binding to inhibitor of nuclear factor kappa-B kinase subunit beta in an ATP non-competitive manner.

John V Napoleon, Sarbjit Singh, Sandeep Rana, Mourad Bendjennat, Vikas Kumar, Smitha Kizhake, Nicholas Y Palermo, Michel M Ouellette, Tom Huxford, Amarnath Natarajan

Open access · greenAbstract read
In one paragraph

Article in Chemical communications (Cambridge, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Small-molecule IKKβ activation modulator (IKAM) targets MAP3K1 and inhibits pancreatic tumor growth.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

John V NapoleonEppley Institute for Research in Cancer and Allied Diseases, UNMC, USA. anatarajan@unmc.edu.
Sarbjit SinghEppley Institute for Research in Cancer and Allied Diseases, UNMC, USA. anatarajan@unmc.edu.
Sandeep RanaEppley Institute for Research in Cancer and Allied Diseases, UNMC, USA. anatarajan@unmc.edu.
Mourad BendjennatEppley Institute for Research in Cancer and Allied Diseases, UNMC, USA. anatarajan@unmc.edu.
Vikas KumarMass Spectrometry and Proteomics Core Facility, UNMC, USA.
Smitha KizhakeEppley Institute for Research in Cancer and Allied Diseases, UNMC, USA. anatarajan@unmc.edu.
Nicholas Y PalermoMass Spectrometry and Proteomics Core Facility, UNMC, USA and Computational Chemistry Core Facility, UNMC, USA.
Michel M OuelletteDivision of Gastroenterology and Hepatology, Department of Internal Medicine, UNMC, USA and Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska 68022, USA.
Tom HuxfordStructural Biochemistry Laboratory, Department of Chemistry & Biochemistry, San Diego State University, San Diego, CA 92182, USA.ORCID http://orcid.org/0000-0002-1939-7373
Amarnath NatarajanEppley Institute for Research in Cancer and Allied Diseases, UNMC, USA. anatarajan@unmc.edu and Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska 68022, USA and Department of Pharmaceutical Sciences and Department of Genetics, Cell Biology and Anatomy, UNMC, USA.ORCID http://orcid.org/0000-0001-5067-0203
IONICS Mass Spectrometry (Canada) · CASusan Thompson Buffett Foundation · USSan Diego State University · US

Funding

UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Apar Kishor Ganti · 1985 to 2026
$55.0M
Target Validation CoreP20GM121316 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Robert E. Lewis · 2018 to 2026
$23.5M
Development of Quinoxaline Based IKKbeta Inhibitors for Kras Driven CancersR01CA197999 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Amarnath (Amar) Natarajan · 2016 to 2026
$3.3M
Phosphorylated Form of Activated IKKbeta and Pancreatic CancerR21CA182820 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI NATARAJAN, AMARNATH (AMAR) · 2014 to 2015
$440k
PROTACs for pancreatic cancer therapyR21CA251151 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI NATARAJAN, AMARNATH (AMAR) · 2020 to 2020
$393k
NCI NIH HHS P30 CA036727NCI NIH HHS R01 CA197999NCI NIH HHS R21 CA182820NCI NIH HHS R21 CA251151NIGMS NIH HHS P20 GM121316
6 · The paper itself

Abstract

Inhibitor of nuclear factor kappa-B kinase subunit beta (IKKβ) is a key regulator of the cannonical NF-κB pathway. IKKβ has been validated as a drug target for pathological conditions, which include chronic inflammatory diseases and cancer. Pharmacological studies revealed that chronic administration of ATP-competitive IKKβ inhibitors resulted in unexpected toxicity. We previously reported the discovery of 13-197 as a non-toxic IKKβ inhibitor that reduced tumor growth. Here, we show that 13-197 inhibits IKKβ in a ATP non-competitive manner and an allosteric pocket at the interface of the kinase and ubiquitin like domains was identified as the potential binding site.

Indexed as

Adenosine TriphosphateBinding SitesDose-Response Relationship, DrugHumansI-kappa B KinaseMolecular StructureProtein Kinase InhibitorsSmall Molecule LibrariesAdenosine TriphosphateI-kappa B KinaseProtein Kinase InhibitorsSmall Molecule Libraries

Identifiers

PMID33977973
PMCPMC8162871
OpenAlexW3142057348

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.