Evidence map›Paper›PMID 33977336›Full record

ArticleFunctional & integrative genomics2021

Novel and known miRNAs in zebu (Tharparkar) and crossbred (Karan-Fries) cattle under heat stress.

Mahesh Kumar, Noyonika, Anjali Aggarwal, Gautam Kaul

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In one paragraph

Article in Functional & integrative genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Mahesh KumarAnimal Biochemistry Division, ICAR-National Dairy Research Institute, Karnal, 132001, Haryana, India.
NoyonikaICAR-Indian Institute of Wheat and Barley, Karnal,, 132001, Haryana, India.
Anjali AggarwalAnimal Physiology Division, ICAR-National Dairy Research Institute, Karnal,, 132001, Haryana, India.
Gautam KaulAnimal Biochemistry Division, ICAR-National Dairy Research Institute, Karnal, 132001, Haryana, India. gkndri@gmail.com.ORCID http://orcid.org/0000-0003-4410-7494
National Dairy Research Institute · INCentral Arid Zone Research Institute · INIndian Institute of Wheat and Barley Research · IN

Funding

ICAR-national innovation in climate resilient agriculture 2049/303
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are small single-stranded non-coding RNAs that act as the master regulator of animal growth and development. RNA-RNA interaction is an important mechanism of gene regulation during biotic and abiotic stress. Heat stress (HS) is one of the most important abiotic factors which affect the growth, milk yield and reproductive health of the dairy animals. In the present investigation, we identified 387 known and 77 novel miRNAs from Tharparkar (TH) and Karan Fries (KF) cattle under HS condition. Family distribution analysis showed the identified miRNAs belong to more than 15 different families in which miR-2284 was the most abundant. We identified 42,350 targets for the known miRNAs reported in cattle. Pathway analysis of the identified targets showed most of the target genes were involved in cancer, mitogen-activated protein kinase (MAPK) signaling, calcium signaling, Ras signaling, and cAMP signaling pathways. Differential gene expression showed more than 344 miRNAs changed their expression significantly between control and HS condition. Heat map was generated for the top 20 most up and downregulated miRNAs. Ten miRNAs were validated using qRT-PCR to be heat responsive, based on read count value and differential gene expression. These novel miRNAs are new addition to the miRNA database of cattle. This study provides an overview of miRNA profile and their interaction with the target genes which leads to further understanding in deciphering the thermotolerance mechanism in cattle.

Indexed as

CattleHeat-Shock ResponseMicroRNAsAnimalsFemaleGene Expression ProfilingGene Expression RegulationThermotoleranceMicroRNAsDifferential gene expressionHeat stressIllumina HiSeqMiRNANext-generation sequencingSmall RNA analysisTarget genes

Identifiers

PMID33977336
OpenAlexW3161394524

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.