Evidence map›Paper›PMID 33976358›Full record

ArticleCommunications biology2021

Parameter-free rendering of single-molecule localization microscopy data for parameter-free resolution estimation.

Adrien C Descloux, Kristin S Grußmayer, Aleksandra Radenovic

Abstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Adrien C DesclouxÉcole Polytechnique Fédérale de Lausanne, Laboratory of Nanoscale Biology, Lausanne, Switzerland. adrien.descloux@epfl.ch.ORCID 0000-0002-3101-6641
Kristin S GrußmayerÉcole Polytechnique Fédérale de Lausanne, Laboratory of Nanoscale Biology, Lausanne, Switzerland.ORCID 0000-0003-4515-4356
Aleksandra RadenovicÉcole Polytechnique Fédérale de Lausanne, Laboratory of Nanoscale Biology, Lausanne, Switzerland. aleksandra.radenovic@epfl.ch.ORCID 0000-0001-8194-2785

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Localization microscopy is a super-resolution imaging technique that relies on the spatial and temporal separation of blinking fluorescent emitters. These blinking events can be individually localized with a precision significantly smaller than the classical diffraction limit. This sub-diffraction localization precision is theoretically bounded by the number of photons emitted per molecule and by the sensor noise. These parameters can be estimated from the raw images. Alternatively, the resolution can be estimated from a rendered image of the localizations. Here, we show how the rendering of localization datasets can influence the resolution estimation based on decorrelation analysis. We demonstrate that a modified histogram rendering, termed bilinear histogram, circumvents the biases introduced by Gaussian or standard histogram rendering. We propose a parameter-free processing pipeline and show that the resolution estimation becomes a function of the localization density and the localization precision, on both simulated and state-of-the-art experimental datasets.

Indexed as

AlgorithmsFluorescent DyesImage Processing, Computer-AssistedMicroscopy, FluorescenceOptical ImagingSingle Molecule ImagingFluorescent Dyes

Identifiers

PMID33976358
PMCPMC8113488

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.