Evidence map›Paper›PMID 33976161›Full record

ArticleNature communications2021

Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities.

Aida Alonso-Del Valle, Ricardo León-Sampedro, Jerónimo Rodríguez-Beltrán, Javier DelaFuente, Marta Hernández-García, Patricia Ruiz-Garbajosa, Rafael Cantón, Rafael Peña-Miller, Alvaro San Millán

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 221 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Do plasmid-dependent phages enable the survival of costly plasmids?bioRxiv : the preprint server for biology · 2026
    Article
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  8. Article
  9. Article
  10. Review
  11. Highly Secure In Vivo DNA Data Storage Driven by Genomic Dynamics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  12. Article
  13. Molecular Insights into Carbapenem Resistance inInternational journal of molecular sciences · 2026
    Review
  14. Article
  15. Article
  16. Article
  17. UnderstandingMicroorganisms · 2026
    Review
  18. Article
  19. Review
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Aida Alonso-Del ValleServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.ORCID http://orcid.org/0000-0002-5154-5778
Ricardo León-SampedroServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.ORCID http://orcid.org/0000-0001-5317-8310
Jerónimo Rodríguez-BeltránServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.ORCID http://orcid.org/0000-0003-3014-1229
Javier DelaFuenteServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.ORCID http://orcid.org/0000-0002-8844-9704
Marta Hernández-GarcíaServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.
Patricia Ruiz-GarbajosaServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.
Rafael CantónServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain.ORCID http://orcid.org/0000-0003-1675-3173
Rafael Peña-MillerCenter for Genomic Sciences, Universidad Nacional Autónoma de México, Cuernavaca, Mexico. rafael.penamiller@gmail.com.ORCID http://orcid.org/0000-0002-2767-0640
Alvaro San MillánServicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria, Madrid, Spain. alvsanmillan@gmail.com.ORCID http://orcid.org/0000-0001-8544-0387
Instituto de Salud Carlos III · ESInstituto Ramón y Cajal de Investigación Sanitaria · ESUniversidad Autónoma del Estado de Morelos · MX

Funding

Wellcome TrustWellcome Trust 203141/Z/16/Z
6 · The paper itself

Abstract

Plasmid persistence in bacterial populations is strongly influenced by the fitness effects associated with plasmid carriage. However, plasmid fitness effects in wild-type bacterial hosts remain largely unexplored. In this study, we determined the fitness effects of the major antibiotic resistance plasmid pOXA-48_K8 in wild-type, ecologically compatible enterobacterial isolates from the human gut microbiota. Our results show that although pOXA-48_K8 produced an overall reduction in bacterial fitness, it produced small effects in most bacterial hosts, and even beneficial effects in several isolates. Moreover, genomic results showed a link between pOXA-48_K8 fitness effects and bacterial phylogeny, helping to explain plasmid epidemiology. Incorporating our fitness results into a simple population dynamics model revealed a new set of conditions for plasmid stability in bacterial communities, with plasmid persistence increasing with bacterial diversity and becoming less dependent on conjugation. These results help to explain the high prevalence of plasmids in the greatly diverse natural microbial communities.

Indexed as

Genetic VariationGene Transfer, HorizontalAlgorithmsAnti-Bacterial AgentsBacteriaDrug Resistance, Multiple, BacterialEnterobacteriaceaeGastrointestinal MicrobiomeGenes, BacterialGenome, BacterialHumansMicrobiotaPhylogenyPlasmidsSpecies SpecificityAnti-Bacterial Agents

Identifiers

PMID33976161
PMCPMC8113577
OpenAlexW3162819558

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.