Evidence map›Paper›PMID 33976152›Full record

ArticleNature communications2021

The tepary bean genome provides insight into evolution and domestication under heat stress.

Samira Mafi Moghaddam, Atena Oladzad, Chushin Koh, Larissa Ramsay, John P Hart, Sujan Mamidi, Genevieve Hoopes, Avinash Sreedasyam, Andrew Wiersma, Dongyan Zhao and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 89 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  8. Genomic Prediction of Adaptation in Common Bean (International journal of molecular sciences · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 2 countries.

Samira Mafi MoghaddamDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Atena OladzadDepartment of Plant Sciences and Genomics and Bioinformatics Program, North Dakota State University, Fargo, ND, USA.
Chushin KohDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
Larissa RamsayDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
John P HartUSDA-ARS-Tropical Agriculture Research Station, Mayaguez, PR, USA.ORCID http://orcid.org/0000-0001-5800-2306
Sujan MamidiHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0002-3837-6121
Genevieve HoopesDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0002-1472-5657
Avinash SreedasyamHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0001-7336-7012
Andrew WiersmaDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Dongyan ZhaoDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0002-2080-8416
Jane GrimwoodHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0002-8356-8325
John P HamiltonDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0002-8682-5526
Jerry JenkinsHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0002-7943-3997
Brieanne VaillancourtDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0002-6795-5173
Joshua C WoodDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0002-7691-6088
Jeremy SchmutzHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0001-8062-9172
Sateesh KagaleNational Research Council Canada, Saskatoon, SK, Canada.
Timothy PorchUSDA-ARS-Tropical Agriculture Research Station, Mayaguez, PR, USA. timothy.porch@usda.gov.ORCID http://orcid.org/0000-0002-5107-2448
Kirstin E BettDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada. K.bett@usask.ca.ORCID http://orcid.org/0000-0001-7959-6959
C Robin BuellDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA. buell@msu.edu.ORCID http://orcid.org/0000-0002-6727-4677
Phillip E McCleanDepartment of Plant Sciences and Genomics and Bioinformatics Program, North Dakota State University, Fargo, ND, USA. phillip.mcclean@ndsu.edu.ORCID http://orcid.org/0000-0002-4809-0864
Michigan State University · USLawrence Berkeley National Laboratory · USUniversity of Saskatchewan · CAHudsonAlpha Institute for Biotechnology · USNorth Dakota State University · USAgricultural Research Service · USSaskatchewan Research Council (Canada) · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tepary bean (Phaseolus acutifolis A. Gray), native to the Sonoran Desert, is highly adapted to heat and drought. It is a sister species of common bean (Phaseolus vulgaris L.), the most important legume protein source for direct human consumption, and whose production is threatened by climate change. Here, we report on the tepary genome including exploration of possible mechanisms for resilience to moderate heat stress and a reduced disease resistance gene repertoire, consistent with adaptation to arid and hot environments. Extensive collinearity and shared gene content among these Phaseolus species will facilitate engineering climate adaptation in common bean, a key food security crop, and accelerate tepary bean improvement.

Indexed as

Evolution, MolecularGenome, PlantAcclimatizationClimate ChangeCrops, AgriculturalDomesticationDroughtsFood SecurityGenetic EngineeringHeat-Shock ResponsePhaseolusPlant Breeding

Identifiers

PMID33976152
PMCPMC8113540
OpenAlexW3161653107

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.