Evidence map›Paper›PMID 33976148›Full record

ArticleNature communications2021

A minimalistic cyclic ice-binding peptide from phage display.

Corey A Stevens, Fabienne Bachtiger, Xu-Dong Kong, Luciano A Abriata, Gabriele C Sosso, Matthew I Gibson, Harm-Anton Klok

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Generating Ice-Binding Protein-Polymer Bioconjugates.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  7. Article
  8. Anionic Synthetic Polymers Prevent Bacteriophage Infection.Journal of the American Chemical Society · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Minimalistic ice recrystallisation inhibitors based on phenylalanine.Chemical communications (Cambridge, England) · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Chemical approaches to cryopreservation.Nature reviews. Chemistry · 2022
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Corey A StevensLaboratoire des Polymères, Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Fabienne BachtigerDepartment of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry, UK.
Xu-Dong KongLaboratory of Therapeutic Proteins and Peptides, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Luciano A AbriataProtein Production and Structure Core Facility and Laboratory for Biomolecular Modeling, École Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0003-3087-8677
Gabriele C SossoDepartment of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry, UK.ORCID 0000-0002-6156-7399
Matthew I GibsonDepartment of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry, UK.ORCID 0000-0002-8297-1278
Harm-Anton KlokLaboratoire des Polymères, Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. harm-anton.klok@epfl.ch.ORCID 0000-0003-3365-6543
École Polytechnique Fédérale de Lausanne · CHUniversity of Warwick · GBSIB Swiss Institute of Bioinformatics · CH

Funding

European Research Council 638661
6 · The paper itself

Abstract

Developing molecules that emulate the properties of naturally occurring ice-binding proteins (IBPs) is a daunting challenge. Rather than relying on the (limited) existing structure-property relationships that have been established for IBPs, here we report the use of phage display for the identification of short peptide mimics of IBPs. To this end, an ice-affinity selection protocol is developed, which enables the selection of a cyclic ice-binding peptide containing just 14 amino acids. Mutational analysis identifies three residues, Asp8, Thr10 and Thr14, which are found to be essential for ice binding. Molecular dynamics simulations reveal that the side chain of Thr10 hydrophobically binds to ice revealing a potential mechanism. To demonstrate the biotechnological potential of this peptide, it is expressed as a fusion ('Ice-Tag') with mCherry and used to purify proteins directly from cell lysate.

Indexed as

MutationAmino AcidsAntifreeze ProteinsBase SequenceBinding SitesCell Surface Display TechniquesCrystallizationHydrophobic and Hydrophilic InteractionsIceMolecular Dynamics SimulationPeptides, CyclicProtein BindingProtein Structure, TertiarySequence Homology, Amino AcidAmino AcidsAntifreeze ProteinsIcePeptides, Cyclic

Identifiers

PMID33976148
PMCPMC8113477
OpenAlexW3162905645

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.