Evidence map›Paper›PMID 33975946›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

HBD1 protein with a tandem repeat of two HMG-box domains is a DNA clip to organize chloroplast nucleoids in

Mari Takusagawa, Yusuke Kobayashi, Yoichiro Fukao, Kumi Hidaka, Masayuki Endo, Hiroshi Sugiyama, Takashi Hamaji, Yoshinobu Kato, Isamu Miyakawa, Osami Misumi and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. DNA origami: a tool to evaluate and harness transcription factors.Journal of molecular medicine (Berlin, Germany) · 2023
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Mari TakusagawaDepartment of Botany, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.ORCID 0000-0003-2854-4483
Yusuke KobayashiDepartment of Botany, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.ORCID 0000-0001-8242-0874
Yoichiro FukaoPlant Global Educational Project, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan.ORCID 0000-0003-0760-570X
Kumi HidakaDepartment of Chemistry, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.
Masayuki EndoDepartment of Chemistry, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.ORCID 0000-0003-0957-3764
Hiroshi SugiyamaDepartment of Chemistry, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.
Takashi HamajiDepartment of Botany, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.ORCID 0000-0002-2801-2148
Yoshinobu KatoDepartment of Botany, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.
Isamu MiyakawaDepartment of Biology, Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yoshida, Yamaguchi 753-8512, Japan.ORCID 0000-0001-7622-2687
Osami MisumiDepartment of Biology, Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yoshida, Yamaguchi 753-8512, Japan.ORCID 0000-0002-7212-9597
Toshiharu ShikanaiDepartment of Botany, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.ORCID 0000-0002-6154-4728
Yoshiki NishimuraDepartment of Botany, Graduate School of Science, Kyoto University, Kita-Shirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan; yoshiki@pmg.bot.kyoto-u.ac.jp.ORCID 0000-0001-8686-9206
Kyoto University · JPYamaguchi University · JPRitsumeikan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Compaction of bulky DNA is a universal issue for all DNA-based life forms. Chloroplast nucleoids (chloroplast DNA-protein complexes) are critical for chloroplast DNA maintenance and transcription, thereby supporting photosynthesis, but their detailed structure remains enigmatic. Our proteomic analysis of chloroplast nucleoids of the green alga

Indexed as

Chlamydomonas reinhardtiiChloroplast ProteinsDNA, ChloroplastGene Expression RegulationGenome, ChloroplastHMG-Box DomainsMass SpectrometryMutationPhylogenyProtein BindingProteomicsTandem Repeat SequencesChloroplast ProteinsDNA, Chloroplastchloroplast nucleoidHMG-box domainmitochondrial nucleoid

Identifiers

PMID33975946
PMCPMC8157925
OpenAlexW3162338531

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.