Evidence map›Paper›PMID 33972713›Full record

ArticleNature plants2021

FERONIA restricts Pseudomonas in the rhizosphere microbiome via regulation of reactive oxygen species.

Yi Song, Andrew J Wilson, Xue-Cheng Zhang, David Thoms, Reza Sohrabi, Siyu Song, Quentin Geissmann, Yang Liu, Lauren Walgren, Sheng Yang He and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed, 1 pooled it
32.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 1 synthesis or guideline pooled it, 209 citations in OpenAlex.

  1. Root colonization by beneficial rhizobacteria.FEMS microbiology reviews · 2024
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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Yi SongDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.
Andrew J WilsonDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.ORCID http://orcid.org/0000-0003-0080-8803
Xue-Cheng ZhangDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA, USA.
David ThomsDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.
Reza SohrabiDepartment of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.
Siyu SongDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.ORCID http://orcid.org/0000-0001-9160-3111
Quentin GeissmannDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.ORCID http://orcid.org/0000-0001-6546-4306
Yang LiuDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.
Lauren WalgrenDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.ORCID http://orcid.org/0000-0002-3441-9403
Sheng Yang HeDepartment of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.
Cara H HaneyDepartment of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada. cara.haney@msl.ubc.ca.ORCID http://orcid.org/0000-0002-6099-6677
University of British Columbia · CABoston University · USHoward Hughes Medical Institute · USMichigan State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maintaining microbiome structure is critical for the health of both plants and animals. By re-screening a collection of Arabidopsis mutants affecting root immunity and hormone crosstalk, we identified a FERONIA (FER) receptor kinase mutant (fer-8) with a rhizosphere microbiome enriched in Pseudomonas fluorescens without phylum-level dysbiosis. Using microbiome transplant experiments, we found that the fer-8 microbiome was beneficial. The effect of FER on rhizosphere pseudomonads was largely independent of its immune scaffold function, role in development and jasmonic acid autoimmunity. We found that the fer-8 mutant has reduced basal levels of reactive oxygen species (ROS) in roots and that mutants deficient in NADPH oxidase showed elevated rhizosphere pseudomonads. The addition of RALF23 peptides, a FER ligand, was sufficient to enrich P. fluorescens. This work shows that FER-mediated ROS production regulates levels of beneficial pseudomonads in the rhizosphere microbiome.

Indexed as

RhizosphereSoil MicrobiologyArabidopsisArabidopsis ProteinsPhosphotransferasesProtein Serine-Threonine KinasesPseudomonadaceaePseudomonas fluorescensReactive Oxygen SpeciesArabidopsis ProteinsAt3g51550 protein, ArabidopsisPhosphotransferasesProtein Serine-Threonine KinasesReactive Oxygen Species

Identifiers

PMID33972713
OpenAlexW3161906613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.