Evidence map›Paper›PMID 33972532›Full record

ArticleNature communications2021

MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography.

Max T B Clabbers, Susannah Holmes, Timothy W Muusse, Parimala R Vajjhala, Sara J Thygesen, Alpeshkumar K Malde, Dominic J B Hunter, Tristan I Croll, Leonie Flueckiger, Jeffrey D Nanson and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Standards for MicroED.Acta crystallographica. Section C, Structural chemistry · 2025
    Article
  13. Review
  14. Review
  15. Review
  16. Unraveling atomic complexity from frozen samples.Structural dynamics (Melville, N.Y.) · 2025
    Article
  17. Structural basis for TIR domain-mediated innate immune signaling by Toll-like receptor adaptors TRIF and TRAM.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Review
  20. o-Vanillin binds covalently to MAL/TIRAP Lys-210 but independently inhibits TLR2.Journal of enzyme inhibition and medicinal chemistry · 2024
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 4 countries.

Max T B Clabbers *Department of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-5466-6508
Susannah Holmes *Australian Research Council Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.
Timothy W MuusseSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-4384-5647
Parimala R VajjhalaSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.
Sara J ThygesenSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.
Alpeshkumar K MaldeInstitute for Glycomics, Griffith University, Southport, Queensland, Australia.ORCID http://orcid.org/0000-0002-8181-1619
Dominic J B HunterSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.
Tristan I CrollCambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.
Leonie FlueckigerAustralian Research Council Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.
Jeffrey D NansonSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-1306-1948
Md Habibur RahamanSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.
Andrew AquilaLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.ORCID http://orcid.org/0000-0003-0358-2774
Mark S HunterLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.ORCID http://orcid.org/0000-0002-0110-7075
Mengning LiangLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Chun Hong YoonLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Jingjing ZhaoDepartment of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-8444-6883
Nadia A ZatsepinAustralian Research Council Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0003-1757-0205
Brian AbbeyAustralian Research Council Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0001-6504-0503
Emma SiereckiEMBL Australia Node in Single Molecule Science, University of New South Wales, Kensington, New South Wales, Australia.ORCID http://orcid.org/0000-0001-9970-868X
Yann GambinEMBL Australia Node in Single Molecule Science, University of New South Wales, Kensington, New South Wales, Australia.
Katryn J StaceySchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.
Connie DarmaninAustralian Research Council Centre of Excellence in Advanced Molecular Imaging, Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia. c.darmanin@latrobe.edu.au.ORCID http://orcid.org/0000-0002-4449-2233
Bostjan KobeSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia. b.kobe@uq.edu.au.ORCID http://orcid.org/0000-0001-9413-9166
Hongyi XuDepartment of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden. hongyi.xu@mmk.su.se.ORCID http://orcid.org/0000-0002-8271-3906
Thomas VeInstitute for Glycomics, Griffith University, Southport, Queensland, Australia. t.ve@griffith.edu.au.ORCID http://orcid.org/0000-0002-0113-1905
The University of Queensland · AUAustralian Research Council · AUSLAC National Accelerator Laboratory · USGriffith University · AUStockholm University · SEUNSW Sydney · AUQueensland University of Technology · AUUniversity of California, Los Angeles · USUniversity of Cambridge · GB

Funding

Wellcome TrustWellcome Trust 209407/Z/17/Z
6 · The paper itself

Abstract

MyD88 and MAL are Toll-like receptor (TLR) adaptors that signal to induce pro-inflammatory cytokine production. We previously observed that the TIR domain of MAL (MAL

Indexed as

CrystallographyDimerizationHEK293 CellsHumansMembrane GlycoproteinsModels, MolecularMolecular Dynamics SimulationMutationMyeloid Differentiation Factor 88Protein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein DomainsReceptors, Interleukin-1Recombinant ProteinsSignal TransductionToll-Like Receptor 4Membrane GlycoproteinsMYD88 protein, humanMyeloid Differentiation Factor 88Receptors, Interleukin-1Recombinant ProteinsTIRAP protein, humanTLR4 protein, humanToll-Like Receptor 4

Identifiers

PMID33972532
PMCPMC8110528
OpenAlexW3162649153

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.