Evidence map›Paper›PMID 33972410›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

2'-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography.

Mateusz Wilamowski, Darren A Sherrell, George Minasov, Youngchang Kim, Ludmilla Shuvalova, Alex Lavens, Ryan Chard, Natalia Maltseva, Robert Jedrzejczak, Monica Rosas-Lemus and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 70 citations in OpenAlex.

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  5. Anti-interferon armamentarium of human coronaviruses.Cellular and molecular life sciences : CMLS · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Mateusz WilamowskiCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637.
Darren A SherrellStructural Biology Center, X-Ray Science Division, Argonne National Laboratory, Lemont, IL 60439.ORCID 0000-0002-6393-8800
George MinasovCenter for Structural Genomics of Infectious Diseases, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.ORCID 0000-0001-5460-3462
Youngchang KimCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637.ORCID 0000-0002-1610-4889
Ludmilla ShuvalovaCenter for Structural Genomics of Infectious Diseases, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.ORCID 0000-0003-1702-6998
Alex LavensStructural Biology Center, X-Ray Science Division, Argonne National Laboratory, Lemont, IL 60439.ORCID 0000-0002-3856-9919
Ryan ChardData Science and Learning Division, Argonne National Laboratory, Lemont, IL 60439.
Natalia MaltsevaCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637.ORCID 0000-0002-2871-465X
Robert JedrzejczakCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637.
Monica Rosas-LemusCenter for Structural Genomics of Infectious Diseases, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.ORCID 0000-0002-6243-0271
Nickolaus SaintData Science and Learning Division, Argonne National Laboratory, Lemont, IL 60439.
Ian T FosterData Science and Learning Division, Argonne National Laboratory, Lemont, IL 60439.ORCID 0000-0003-2129-5269
Karolina MichalskaCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637.ORCID 0000-0001-7140-3649
Karla J F SatchellCenter for Structural Genomics of Infectious Diseases, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611.ORCID 0000-0003-3274-7611
Andrzej JoachimiakCenter for Structural Genomics of Infectious Diseases, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637; andrzejj@anl.gov.
Argonne National Laboratory · USNorthwestern University · USJagiellonian University · PL

Funding

NIAID NIH HHS HHSN272201700060C
6 · The paper itself

Abstract

The genome of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) coronavirus has a capping modification at the 5'-untranslated region (UTR) to prevent its degradation by host nucleases. These modifications are performed by the Nsp10/14 and Nsp10/16 heterodimers using S-adenosylmethionine as the methyl donor. Nsp10/16 heterodimer is responsible for the methylation at the ribose 2'-O position of the first nucleotide. To investigate the conformational changes of the complex during 2'-O methyltransferase activity, we used a fixed-target serial synchrotron crystallography method at room temperature. We determined crystal structures of Nsp10/16 with substrates and products that revealed the states before and after methylation, occurring within the crystals during the experiments. Here we report the crystal structure of Nsp10/16 in complex with Cap-1 analog (

Indexed as

CrystallographyMethylationMethyltransferasesMultiprotein ComplexesRNA Cap AnalogsRNA CapsRNA, MessengerRNA, ViralS-AdenosylhomocysteineS-AdenosylmethionineSARS-CoV-2SynchrotronsViral Nonstructural ProteinsViral Regulatory and Accessory Proteinscap I RNA (nucleoside-2'-)methyltransferaseMethyltransferasesMultiprotein ComplexesNSP16 protein, SARS-CoV-2ORF1ab polyprotein, SARS-CoV-2RNA Cap AnalogsRNA CapsRNA, MessengerRNA, ViralS-AdenosylhomocysteineS-AdenosylmethionineViral Nonstructural ProteinsViral Regulatory and Accessory ProteinsCAP-1mRNANsp10/16SARS-CoV-2serial crystallography

Identifiers

PMID33972410
PMCPMC8166198
OpenAlexW3162610282

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.