Evidence map›Paper›PMID 33971810›Full record

ArticleBMC ecology and evolution2021

The diversity of opsins in Lake Baikal amphipods (Amphipoda: Gammaridae).

Polina Drozdova, Alena Kizenko, Alexandra Saranchina, Anton Gurkov, Maria Firulyova, Ekaterina Govorukhina, Maxim Timofeyev

Open access · goldAbstract read
In one paragraph

Article in BMC ecology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Crustacean conundrums: a review of opsin diversity and evolution.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Polina DrozdovaIrkutsk State University, Irkutsk, Russia. drozdovapb@gmail.com.
Alena KizenkoBioinfomatics Institute, St. Petersburg, Russia.
Alexandra SaranchinaIrkutsk State University, Irkutsk, Russia.
Anton GurkovIrkutsk State University, Irkutsk, Russia.
Maria FirulyovaComputer Technologies Department, ITMO University, St. Petersburg, Russia.
Ekaterina GovorukhinaIrkutsk State University, Irkutsk, Russia.
Maxim TimofeyevIrkutsk State University, Irkutsk, Russia. m.a.timofeyev@gmail.com.
Irkutsk State University · RUBaikal Research Centre · RUBioinformatics Institute · RUITMO University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVision is a crucial sense for the evolutionary success of many animal groups. Here we explore the diversity of visual pigments (opsins) in the transcriptomes of amphipods (Crustacea: Amphipoda) and conclude that it is restricted to middle (MWS) and long wavelength-sensitive (LWS) opsins in the overwhelming majority of examined species.

resultsWe evidenced (i) parallel loss of MWS opsin expression in multiple species (including two independently evolved lineages from the deep and ancient Lake Baikal) and (ii) LWS opsin amplification (up to five transcripts) in both Baikal lineages. The number of LWS opsins negatively correlated with habitat depth in Baikal amphipods. Some LWS opsins in Baikal amphipods contained MWS-like substitutions, suggesting that they might have undergone spectral tuning.

conclusionsThis repeating two-step evolutionary scenario suggests common triggers, possibly the lack of light during the periods when Baikal was permanently covered with thick ice and its subsequent melting. Overall, this observation demonstrates the possibility of revealing climate history by following the evolutionary changes in protein families.

Indexed as

AmphipodaOpsinsAnimalsBiological EvolutionLakesPhylogenyOpsinsAncient ecosystemsCrustacea: Malacostraca: AmphipodaLake BaikalParallel evolutionVision

Identifiers

PMID33971810
PMCPMC8108468
OpenAlexW3161086158

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.