Evidence map›Paper›PMID 33970997›Full record

ArticleJornal brasileiro de nefrologia

Clinical validation of an in-house quantitative real time PCR assay for cytomegalovirus infection using the 1st WHO International Standard in kidney transplant patients.

Cassia F B Caurio, Odelta S Allende, Roger Kist, Kênya L Santos, Izadora C S Vasconcellos, Franciéli P Rozales, Daiane F Dalla Lana, Bruno M Praetzel, Ana Paula Alegretti, Alessandro C Pasqualotto

Abstract read
In one paragraph

Article in Jornal brasileiro de nefrologia. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cassia F B CaurioSanta Casa de Misericórdia de Porto Alegre, Porto Alegre, RS, Brasil.ORCID http://orcid.org/0000-0002-0533-9420
Odelta S AllendeSanta Casa de Misericórdia de Porto Alegre, Porto Alegre, RS, Brasil.
Roger KistSanta Casa de Misericórdia de Porto Alegre, Porto Alegre, RS, Brasil.
Kênya L SantosUniversidade Federal de Ciências da Saúde de Porto Alegre, Porto Alegre, RS, Brasil.
Izadora C S VasconcellosSanta Casa de Misericórdia de Porto Alegre, Porto Alegre, RS, Brasil.
Franciéli P RozalesSanta Casa de Misericórdia de Porto Alegre, Porto Alegre, RS, Brasil.
Daiane F Dalla LanaUniversidade Federal de Ciências da Saúde de Porto Alegre, Porto Alegre, RS, Brasil.
Bruno M PraetzelUniversidade Federal de Ciências da Saúde de Porto Alegre, Porto Alegre, RS, Brasil.
Ana Paula AlegrettiHospital de Clínicas de Porto Alegre, Porto Alegre, RS, Brasil.
Alessandro C PasqualottoSanta Casa de Misericórdia de Porto Alegre, Porto Alegre, RS, Brasil.ORCID http://orcid.org/0000-0002-6782-5395

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionCytomegalovirus (CMV) is one of the most common agents of infection in solid organ transplant patients, with significant morbidity and mortality.

objectiveThis study aimed to establish a threshold for initiation of preemptive treatment. In addition, the study compared the performance of antigenemia with qPCR results. STUDY

designThis was a prospective cohort study conducted in 2017 in a single kidney transplant center in Brazil. Clinical validation was performed by comparing in-house qPCR results, against standard of care at that time (Pp65 CMV Antigenemia). ROC curve analysis was performed to determine the ideal threshold for initiation of preemptive therapy based on the qPCR test results.

resultsTwo hundred and thirty two samples from 30 patients were tested with both antigenemia and qPCR, from which 163 (70.26%) were concordant (Kappa coefficient: 0.435, p<0.001; Spearman correlation: 0.663). PCR allowed for early diagnoses. The median number of days for the first positive result was 50 (range, 24-105) for antigenemia and 42 (range, 24-74) for qPCR (p<0.001). ROC curve analysis revealed that at a threshold of 3,430 IU/mL (Log 3.54), qPCR had a sensitivity of 97.06% and a specificity of 74.24% (AUC 0.92617 ± 0.0185, p<0.001), in the prediction of 10 cells/105 leukocytes by antigenemia and physician's decision to treat.

conclusionsCMV Pp65 antigenemia and CMV qPCR showed fair agreement and a moderate correlation in this study. The in-house qPCR was revealed to be an accurate method to determine CMV DNAemia in kidney transplant patients, resulting in positive results weeks before antigenemia.

Indexed as

Cytomegalovirus InfectionsKidney TransplantationAntigens, ViralDNA, ViralHumansProspective StudiesReal-Time Polymerase Chain ReactionViral LoadWorld Health OrganizationAntigens, ViralDNA, Viral

Identifiers

PMID33970997
PMCPMC8940123

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