Evidence map›Paper›PMID 33970549›Full record

ArticleCancer science2021

TET1 upregulation drives cancer cell growth through aberrant enhancer hydroxymethylation of HMGA2 in hepatocellular carcinoma.

Kiyokazu Shirai, Genta Nagae, Motoaki Seki, Yotaro Kudo, Asuka Kamio, Akimasa Hayashi, Atsushi Okabe, Satoshi Ota, Shuichi Tsutsumi, Takanori Fujita and 8 more

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  7. Pleiotropic GeneAnimals : an open access journal from MDPI · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 1 country.

Kiyokazu ShiraiGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Genta NagaeGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0002-2929-7990
Motoaki SekiGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Yotaro KudoDepartment of Gastroenterology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Asuka KamioGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Akimasa HayashiGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Atsushi OkabeGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Satoshi OtaGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Shuichi TsutsumiGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Takanori FujitaGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Shogo YamamotoGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0002-5564-2567
Ryo NakakiGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Yasuharu KankiDivision of Clinical Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Tsuyoshi OsawaDivision of Integrative Nutriomics and Oncology, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
Yutaka MidorikawaDepartment of Digestive Surgery, Nihon University School of Medicine, Tokyo, Japan.ORCID https://orcid.org/0000-0002-6662-0494
Keisuke TateishiDepartment of Gastroenterology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Masao IchinoseDepartment of Gastroenterology, Wakayama Medical University, Wakayama, Japan.
Hiroyuki AburataniGenome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan.
The University of Tokyo · JPChiba University · JPWakayama Medical University · JPKyorin University · JPNihon University · JPTokyo University of Technology · JPUniversity of Tsukuba · JP

Funding

Japan Science and Technology Agency 24221011Ministry of Education, Culture, Sports, Science and Technology 25860521National Institute of Biomedical Innovation
6 · The paper itself

Abstract

Ten-eleven translocation 1 (TET1) is an essential methylcytosine dioxygenase of the DNA demethylation pathway. Despite its dysregulation being known to occur in human cancer, the role of TET1 remains poorly understood. In this study, we report that TET1 promotes cell growth in human liver cancer. The transcriptome analysis of 68 clinical liver samples revealed a subgroup of TET1-upregulated hepatocellular carcinoma (HCC), demonstrating hepatoblast-like gene expression signatures. We performed comprehensive cytosine methylation and hydroxymethylation (5-hmC) profiling and found that 5-hmC was aberrantly deposited preferentially in active enhancers. TET1 knockdown in hepatoma cell lines decreased hmC deposition with cell growth suppression. HMGA2 was highly expressed in a TET1

Indexed as

Carcinoma, HepatocellularCell Line, TumorCell ProliferationChromatinCytosineDioxygenasesDNA MethylationEpigenesis, GeneticGene ExpressionGene Knockdown TechniquesHMGA2 ProteinHumansLiver NeoplasmsMixed Function OxygenasesNeoplasm ProteinsProto-Oncogene ProteinsChromatinCytosineDioxygenasesHMGA2 ProteinHMGA2 protein, humanMixed Function OxygenasesNeoplasm ProteinsProto-Oncogene ProteinsTET1 protein, humanenhancerepigenome profilinghepatocellular carcinomahydroxymethylationTET1

Identifiers

PMID33970549
PMCPMC8253281
OpenAlexW3162937770

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.