Evidence map›Paper›PMID 33970533›Full record

ArticleMicrobiologyOpen2021

Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging.

Xunmin Tan, Tingjia Chai, Jiajia Duan, Jing Wu, Hanping Zhang, Yifan Li, Yu Huang, Xi Hu, Peng Zheng, Jinlin Song and 4 more

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Revolutionized virome research using systems microbiology approaches.Experimental biology and medicine (Maywood, N.J.) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Xunmin TanDepartment of Neurology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Tingjia ChaiNHC Key Laboratory of Diagnosis and Treatment on Brain Functional Diseases, Chongqing Medical University, Chongqing, China.
Jiajia DuanNHC Key Laboratory of Diagnosis and Treatment on Brain Functional Diseases, Chongqing Medical University, Chongqing, China.
Jing WuNHC Key Laboratory of Diagnosis and Treatment on Brain Functional Diseases, Chongqing Medical University, Chongqing, China.
Hanping ZhangDepartment of Neurology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Yifan LiDepartment of Neurology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Yu HuangDepartment of Neurology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Xi HuDepartment of Neurology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Peng ZhengDepartment of Neurology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Jinlin SongCollege of Stomatology, Chongqing Medical University, Chongqing, China.
Ping JiCollege of Stomatology, Chongqing Medical University, Chongqing, China.
Xin JinChongqing Key Laboratory for Oral Diseases and Biomedical Sciences, Chongqing, China.
Hongmei ZhangCollege of Stomatology, Chongqing Medical University, Chongqing, China.
Peng XieDepartment of Neurology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.ORCID 0000-0002-0081-6048
The Affiliated Yongchuan Hospital of Chongqing Medical University · CNStomatological Hospital of Chongqing Medical University · CNChongqing Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aging is a critical factor affecting physical health and disease in mammals. Emerging evidence indicates that aging may affect the gut bacteriome in cynomolgus macaques, but little is known about whether or how the gut virome changes with age. Here, we compared the DNA gut viral composition of 16 female cynomolgus monkeys (Macaca fascicularis) at three life stages (young, adult, and old) using the shotgun metagenome sequencing method. We found that the DNA gut virome from these monkeys differed substantially among the three groups. The gut viruses were dominated by bacteriophages, the most abundant of which was the Caudovirales order (i.e., Siphoviridae, Myoviridae, and Podoviridae families). Additionally, the co-occurrence analysis revealed that the age-related bacteriophages were correlated in an extensive and complex manner with the main intestinal bacteria (i.e., Firmicutes, Bacteroidetes, Proteobacteria, and Actinobacteria phyla). Furthermore, the age-related DNA gut viral functions were enriched for genetic information processing, nucleotide, and folate metabolism. Our gut virome analysis provides new insight into how aging influences the gut virome of non-human primates.

Indexed as

Gastrointestinal MicrobiomeMetagenomeViromeAgingAnimalsBacteriophagesCaudoviralesDNA, ViralFecesFemaleMacaca fascicularisMetagenomicsSequence Analysis, DNADNA, Viralagingbacteriophagescynomolgus macaquesDNA gut viromeshotgun metagenome sequencing

Identifiers

PMID33970533
PMCPMC8087919
OpenAlexW3162361604

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.