Evidence map›Paper›PMID 33969236›Full record

ArticleGene reports2021

Analysis of single nucleotide polymorphisms between 2019-nCoV genomes and its impact on codon usage.

Suruchi Gupta, Prosenjit Paul, Ravail Singh

Abstract read
In one paragraph

Article in Gene reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Suruchi GuptaCSIR-Indian Institute of Integrative Medicine, Jammu 180001, India.
Prosenjit PaulNegenome Bio Solutions Pvt Ltd, Jalukbari, Guwahati 781014, India.
Ravail SinghCSIR-Indian Institute of Integrative Medicine, Jammu 180001, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The spread of SARS-CoV-2 is a global concern that has taken a toll on entire human health. Researchers across the globe have been working in devising the strategies to combat this dreadful disease. Studies focused on genetic variability help design effective drugs and vaccines. Considering this, the present study entails the information regarding the genome-wide mutations detected in the 108 SARS CoV-2 genomes worldwide. We identified a few hypervariable regions localized in orf1ab, spike, and nucleocapsid gene. These nucleotide polymorphisms demonstrated their effect on both codon usage as well as amino acid usage pattern. Altogether the present study provides valuable information that would be helpful to ongoing research on 2019-nCoV vaccine development.

Indexed as

Amino acidsGenetic variationsHypervariable regionMutationsS-protein

Identifiers

PMID33969236
PMCPMC8096765

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.