Evidence map›Paper›PMID 33965373›Full record

ArticleThe Journal of biological chemistry

Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6.

Eugene Kuatsjah, Anson C K Chan, Rui Katahira, Stefan J Haugen, Gregg T Beckham, Michael E P Murphy, Lindsay D Eltis

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Eugene KuatsjahDepartment of Microbiology and Immunology, Life Sciences Institute, The University of British Columbia, Vancouver, Canada; Renewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA; Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge Tennessee, USA.
Anson C K ChanDepartment of Microbiology and Immunology, Life Sciences Institute, The University of British Columbia, Vancouver, Canada.
Rui KatahiraRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA.
Stefan J HaugenRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA.
Gregg T BeckhamRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA; Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge Tennessee, USA.
Michael E P MurphyDepartment of Microbiology and Immunology, Life Sciences Institute, The University of British Columbia, Vancouver, Canada; BioProducts Institute, The University of British Columbia, Vancouver, Canada.
Lindsay D EltisDepartment of Microbiology and Immunology, Life Sciences Institute, The University of British Columbia, Vancouver, Canada; BioProducts Institute, The University of British Columbia, Vancouver, Canada. Electronic address: leltis@mail.ubc.ca.
University of British Columbia · CANational Laboratory of the Rockies · USOak Ridge National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lignostilbene-α,β-dioxygenases (LSDs) are iron-dependent oxygenases involved in the catabolism of lignin-derived stilbenes. Sphingobium sp. SYK-6 contains eight LSD homologs with undetermined physiological roles. To investigate which homologs are involved in the catabolism of dehydrodiconiferyl alcohol (DCA), derived from β-5 linked lignin subunits, we heterologously produced the enzymes and screened their activities in lysates. The seven soluble enzymes all cleaved lignostilbene, but only LSD2, LSD3, and LSD4 exhibited high specific activity for 3-(4-hydroxy-3-(4-hydroxy-3-methoxystyryl)-5-methoxyphenyl) acrylate (DCA-S) relative to lignostilbene. LSD4 catalyzed the cleavage of DCA-S to 5-formylferulate and vanillin and cleaved lignostilbene and DCA-S (∼10

Indexed as

Bacterial ProteinsCrystallography, X-RayDioxygenasesLigninModels, MolecularProtein ConformationSphingomonadaceaeSubstrate SpecificityBacterial ProteinsDioxygenasesLigninlignostilbene-alpha,beta-dioxygenasearomatic catabolismbacterial catabolismcarotenoid cleavage oxygenaselignin degradationlignostilbene

Identifiers

PMID33965373
PMCPMC8191317
OpenAlexW3157180483

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.