Evidence map›Paper›PMID 33965046›Full record

ArticleTalanta2021

High-throughput protein modification quantitation analysis using intact protein MRM and its application on hENGase inhibitor screening.

Dingyin Tao, Miao Xu, Atena Farkhondeh, Andrew P Burns, Steven Rodems, Matthew Might, Wei Zheng, Christopher A LeClair

Open access · greenAbstract read
In one paragraph

Article in Talanta, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Dingyin TaoNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA. Electronic address: dingyin.tao@nih.gov.
Miao XuNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA.
Atena FarkhondehNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA.
Andrew P BurnsNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA.
Steven RodemsTraverse Therapeutics, San Diego, CA, 92130, USA.
Matthew MightUniversity of Alabama at Birmingham, Birmingham, AL, 35210, USA.
Wei ZhengNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA.
Christopher A LeClairNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA. Electronic address: leclairc@mail.nih.gov.
National Institutes of Health · USTherapeutics Clinical Research · USUniversity of Alabama at Birmingham · US

Funding

Drug Repurposing Screening for Rare and Neglected DiseasesZIATR000018 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI ZHENG, WEI · 2015 to 2025
$24.6M
Analytical ChemistryZICTR000037 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI LECLAIR, CHRISTOPHER ARTHUR · 2015 to 2025
$23.2M
Intramural NIH HHS Z99 TR999999
6 · The paper itself

Abstract

Proteins are widely used as drug targets, enzyme substrates, and biomarkers for numerous diseases. The emerging demand for proteins quantitation has been increasing in multiple fields. Currently, there is still a big gap for high-throughput protein quantitation at intact protein level using label-free method. Here we choose ribonuclease B (RNB) as a model, which is the substrate for human endo-β-N-acetylglucosaminidase (hENGase), a promising drug target for the treatment of N-Glycanase deficiency. Intact proteinlevel multiple reaction monitoring (MRM) methods were initally developed and optimized to quantify RNB and deglycosylated RNB (RNB-deg), with the S/N ratio improved by nearly 20-fold compared to the traditional full MS scan methods. To further increase the throughput making it possible for hENGase inhibitors screen, the protein MRM methods were introduced to the RapidFire-MS/MS system, achieving at least 12-fold throughput improvement. This assay was further optimized into 384-well plate format for compound screening with S/B ratio >37-fold and Z' factor >0.7 that is suitable for high-throughput screening of compound collections with a speed of 2 h per 384-well plate and an ability to screen over 3000 compounds per day at a single concentration dose. This 384-well plate based automated SPE-MS/MS assay is efficient and robust for compound screening and the assay format has a wide applicability to protein targets for other disease models.

Indexed as

High-Throughput Screening AssaysTandem Mass SpectrometryHumanshENGaseHigh-throughput screeningMass spectrometryMRMNGLY1RapidFire

Identifiers

PMID33965046
PMCPMC8215893
OpenAlexW3149410955

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.