Evidence map›Paper›PMID 33964275›Full record

ArticleBiophysical journal2021

Biased reorientation in the chemotaxis of peritrichous bacteria Salmonella enterica serovar Typhimurium.

Tonau Nakai, Taishi Ando, Tomonobu Goto

Open access · hybridAbstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Oscillators and servomechanisms in navigation and orientation.Communicative & integrative biology · 2024
    Article
  3. Article
  4. Inter-turn intervals inCommunicative & integrative biology · 2024
    Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Tonau NakaiDepartment of Mechanical and Aerospace Engineering, Graduate School of Engineering, Tottori University, Tottori, Tottori, Japan; Advanced Mechanical and Electronic System Research Center, Faculty of Engineering, Tottori University, Tottori, Tottori, Japan. Electronic address: nakai@tottori-u.ac.jp.
Taishi AndoDepartment of Mechanical and Aerospace Engineering, Graduate School of Engineering, Tottori University, Tottori, Tottori, Japan.
Tomonobu GotoDepartment of Mechanical and Aerospace Engineering, Graduate School of Engineering, Tottori University, Tottori, Tottori, Japan; Advanced Mechanical and Electronic System Research Center, Faculty of Engineering, Tottori University, Tottori, Tottori, Japan.
Tottori University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many kinds of peritrichous bacteria that repeat runs and tumbles by using multiple flagella exhibit chemotaxis by sensing a difference in the concentration of the attractant or repellent between two adjacent time points. If a cell senses that the concentration of an attractant has increased, their flagellar motors decrease the switching frequency from counterclockwise to clockwise direction of rotation, which causes a longer run in swimming up the concentration gradient than swimming down. We investigated the turn angle in tumbles of peritrichous bacteria swimming across the concentration gradient of a chemoattractant because the change in the switching frequency in the rotational direction may affect the way tumbles. We tracked several hundreds of runs and tumbles of single cells of Salmonella enterica serovar Typhimurium in the concentration gradient of L-serine and found that the turn angle depends on the concentration gradient that the cell senses just before the tumble. The turn angle is biased toward a smaller value when the cells swim up the concentration gradient, whereas the distribution of the angle is almost uniform (random direction) when the cells swim down the gradient. The effect of the observed bias in the turn angle on the degree of chemotaxis was investigated by random walk simulation. In the concentration field where attractants diffuse concentrically from the point source, we found that this angular distribution clearly affects the reduction of the mean-square displacement of the cell that has started at the attractant source, that is, the bias in the turn angle distribution contributes to chemotaxis in peritrichous bacteria.

Indexed as

ChemotaxisSalmonella typhimuriumComputer SimulationFlagellaModels, BiologicalSerogroup

Identifiers

PMID33964275
PMCPMC8390861
OpenAlexW3157516937

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.