Evidence map›Paper›PMID 33963905›Full record

ArticleJournal of cancer research and clinical oncology2021

Prognostic value and characterization of NTRK1 variation by fluorescence in situ hybridization in esophageal squamous cell carcinoma.

Zixiang Yu, Haixing Wang, Qi Song, Jie Huang, Jianfang Xu, Jieakesu Su, Hao Wang, Lijie Tan, Xin Wang, Zhengzeng Jiang and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Zixiang Yu *Department of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Haixing Wang *Department of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Qi SongDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Jie HuangDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Jianfang XuDepartment of Pathology, Xiamen Branch of Zhongshan Hospital, Fudan University, Xiamen, Fujian, 361015, People's Republic of China.
Jieakesu SuDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Hao WangDepartment of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Lijie TanDepartment of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Xin WangDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Zhengzeng JiangDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Weijie ChenDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Dongxian JiangDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China. jiangdongxian3@aliyun.com.
Yingyong HouDepartment of Pathology, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China. houyingyong@aliyun.com.ORCID http://orcid.org/0000-0001-9156-2305
Sun Yat-sen University · CNFudan University · CNShanghai Medical College of Fudan University · CN

Funding

National Natural Science Foundation of China 81702372Shanghai Municipal Commission of Science and Technology 19441904000Shanghai Municipal Key Clinical Specialty shslczdzk01302Shanghai Natural Science Foundation of China 18ZR1406800Shanghai Science and Technology Development Fund 19MC1911000Xiamen Science and Technology Project of Fujian Province, China 3502Z20184003
6 · The paper itself

Abstract

purposeRearrangement of the neurotrophic tyrosine kinase receptor (NTRK) 1 gene is a target of tropomyosin receptor kinase A (TRKA) inhibitors, and its targeted drug (larotrectinib) has been approved by the US Food and Drug Administration. We investigated the existence and prognostic importance of NTRK1 variation in esophageal squamous cell carcinoma (ESCC).

methodsFluorescence in situ hybridization of a NTRK1 rearrangement was conducted on 523 ESCC samples through tissue microarrays. Kaplan-Meier curves with log-rank tests were used to evaluate survival.

resultsWe identified 8 (1.5%), 35(6.7%) and 109 (20.8%) cases with a NTRK1 rearrangement using 15%, 10% and 5% as cut-off values, respectively. We observed copy number (CN) variation of NTRK1 in some cases: 79 (15.1%) cases had a gain in NTRK1 CN ≥ 3, and 24 (4.6%) cases had NTRK1 CN ≥ 4. A NTRK1 rearrangement at the above-mentioned thresholds was not related to disease-free survival (DFS, P = 0.45, 0.47, 0.87) and overall survival (OS, P = 0.80, 0.74, 0.57), respectively. Gain in NTRK1 CN was associated with a poor prognosis irrespective of whether NTRK1 CN ≥ 4 (DFS, P = 0.015; OS, P = 0.035) or NTRK1 CN ≥ 3 (DFS, P = 0.039; OS, P = 0.025).

conclusionA NTRK1 rearrangement occurred rarely in ESCC. The increased CN of NTRK1 might be a prognostic indicator for DFS and OS in patients with ESCC.

Indexed as

Gene RearrangementAdultAgedAged, 80 and overBiomarkers, TumorEsophageal NeoplasmsEsophageal Squamous Cell CarcinomaEsophagectomyFemaleFollow-Up StudiesHumansIn Situ Hybridization, FluorescenceMaleMiddle AgedPrognosisReceptor, trkABiomarkers, TumorNTRK1 protein, humanReceptor, trkAEsophageal squamous cell carcinoma (ESCC)Fluorescence in situ hybridization (FISH)Gene copy number variationNTRK1PrognosisRearrangement

Identifiers

PMID33963905
PMCPMC11802023
OpenAlexW3159259833

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.