Evidence map›Paper›PMID 33963760›Full record

ArticleClinical genetics2021

PPP3CA truncating variants clustered in the regulatory domain cause early-onset refractory epilepsy.

Sugi Panneerselvam, Julia Wang, Wenmiao Zhu, Hongzheng Dai, John G Pappas, Rachel Rabin, Karen J Low, Jill A Rosenfeld, Lisa Emrick, Rui Xiao and 12 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Clinical genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

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  13. Investigation of Copy Number Variations (CNVs) of the GoatAnimals : an open access journal from MDPI · 2022
    Article
  14. Case report: A novelFrontiers in neurology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 9 institutions in 4 countries.

Sugi PanneerselvamDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Julia WangMedical Scientist Training Program and Developmental Biology, Baylor College of Medicine, Houston, Texas, USA.
Wenmiao ZhuBaylor Genetics Laboratories, Houston, Texas, USA.
Hongzheng DaiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
John G PappasDepartment of Pediatrics, Clinical Genetic Services, NYU School of Medicine, New York, New York, USA.
Rachel RabinDepartment of Pediatrics, Clinical Genetic Services, NYU School of Medicine, New York, New York, USA.
Karen J LowUniversity Hospital Bristol NHS Foundation Trust, Bristol, UK.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0001-5664-7987
Lisa EmrickTexas Children's Hospital, Houston, Texas, USA.
Rui XiaoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Fan XiaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Yaping YangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Christine M EngDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Anne AndersonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Vann ChauDivision of Neurology, Department of Pediatrics, University of Toronto, The Hospital for Sick Children, Toronto, Ontario, Canada.
Claudia Soler-AlfonsoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Haley StreffDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Seema R LalaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Saadet Mercimek-AndrewsDivision of Clinical and Metabolic Genetics, Department of Pediatrics, University of Toronto, The Hospital for Sick Children, Toronto, Ontario, Canada.
Undiagnosed Diseases Network
DDD StudyWellcome Trust Sanger Institute, Cambridge, UK.
Weimin BiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-1330-7031
Baylor College of Medicine · USNew York University · USBaylor Genetics · USTexas Children's Hospital · USTexas Medical Center · USUniversity Hospitals Bristol NHS Foundation Trust · GBUniversity of Alberta · CAUniversity of Toronto · CAWellcome Sanger Institute · GB

Funding

Pilot of New Technologies to Increase the Genomic Diagnosis of Undiagnosed Disease Network (UDN) PatientsU01HG007709 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BACINO, CARLOS A., LEE, BRENDAN · 2014 to 2022
$14.3M
NHGRI NIH HHS U01 HG007709
6 · The paper itself

Abstract

PPP3CA encodes the catalytic subunit of calcineurin, a calcium-calmodulin-regulated serine-threonine phosphatase. Loss-of-function (LoF) variants in the catalytic domain have been associated with epilepsy, while gain-of-function (GoF) variants in the auto-inhibitory domain cause multiple congenital abnormalities. We herein report five new patients with de novo PPP3CA variants. Interestingly, the two frameshift variants in this study and the six truncating variants reported previously are all located within a 26-amino acid region in the regulatory domain (RD). Patients with a truncating variant had more severe earlier onset seizures compared to patients with a LoF missense variant, while autism spectrum disorder was a more frequent feature in the latter. Expression studies of a truncating variant showed apparent RNA expression from the mutant allele, but no detectable mutant protein. Our data suggest that PPP3CA truncating variants clustered in the RD, causing more severe early-onset refractory epilepsy and representing a type of variants distinct from LoF or GoF missense variants.

Indexed as

MutationAdolescentCalcineurinChildChild, PreschoolDrug Resistant EpilepsyEpilepsyFemaleGene ExpressionHumansMaleSequence Analysis, RNACalcineurinPPP3CA protein, humancalcineurinconstitutive activationepileptic syndromesgain-of-functionloss-of-functiontruncating variants

Identifiers

PMID33963760
PMCPMC11698261
OpenAlexW3159245202

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.