Evidence map›Paper›PMID 33963188›Full record

ArticleNature communications2021

Selective sweep for an enhancer involucrin allele identifies skin barrier adaptation out of Africa.

Mary Elizabeth Mathyer, Erin A Brettmann, Alina D Schmidt, Zane A Goodwin, Inez Y Oh, Ashley M Quiggle, Eric Tycksen, Natasha Ramakrishnan, Scot J Matkovich, Emma Guttman-Yassky and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Involucrin Modulates Vitamin D Receptor Activity in the Epidermis.The Journal of investigative dermatology · 2023
    Article
  4. Evolutionary context of psoriatic immune skin response.Evolution, medicine, and public health · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Mary Elizabeth Mathyer *Division of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.ORCID http://orcid.org/0000-0003-4725-7439
Erin A Brettmann *Division of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.ORCID http://orcid.org/0000-0001-8603-0670
Alina D SchmidtDivision of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Zane A GoodwinDivision of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Inez Y OhDivision of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Ashley M QuiggleDivision of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Eric TycksenMcDonnell Genome Institute, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Natasha RamakrishnanDivision of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Scot J MatkovichCenter for Pharmacogenomics, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Emma Guttman-YasskyDepartment of Dermatology, Icahn School of Medicine at Mt. Sinai, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0002-9363-324X
John R EdwardsCenter for Pharmacogenomics, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA.
Cristina de Guzman StrongDivision of Dermatology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, MO, 63110, USA. cristinastrong@wustl.edu.ORCID http://orcid.org/0000-0001-8540-9611
Washington University in St. Louis · USIcahn School of Medicine at Mount Sinai · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
INSTITUTIONAL TRAINING GRANT IN GENOMIC SCIENCET32HG000045 · NHGRI · WASHINGTON UNIVERSITY · PI MICHAEL R BRENT, Barak A Cohen · 1997 to 2026
$8.4M
MAXIMIZING STUDENT DIVERSITY IN THE BIOMEDICAL SCIENCES AT WASHINGTON UNIVERSITYR25GM103757 · NIGMS · WASHINGTON UNIVERSITY · PI SKEATH, JAMES BENJAMIN · 2013 to 2022
$4.5M
ANIMAL SUPPORT SPACE FOR NEUROSCIENCEC06RR015502 · NCRR · WASHINGTON UNIVERSITY · PI CICERO, THEODORE J · 2000 to 2000
$2.0M
Chromatin Remodeling of the Epidermal Differentiation ComplexR01AR065523 · NIAMS · WASHINGTON UNIVERSITY · PI STRONG, CRISTINA DE GUZMAN · 2015 to 2019
$1.7M
Computational modeling of DNA methylation-mediated gene regulationR01LM013096 · NLM · WASHINGTON UNIVERSITY · PI EDWARDS, JOHN R. · 2019 to 2022
$1.4M
Characterization of Enhancers in the Epidermal Differentiation ComplexR00AR055948 · NIAMS · WASHINGTON UNIVERSITY · PI STRONG, CRISTINA DE GUZMAN · 2010 to 2012
$725k
Skin Barrier AdaptationR56AR075427 · NIAMS · WASHINGTON UNIVERSITY · PI STRONG, CRISTINA DE GUZMAN · 2020 to 2020
$405k
NCATS NIH HHS UL1 TR002345NCI NIH HHS P30 CA091842NCRR NIH HHS C06 RR015502NHGRI NIH HHS T32 HG000045NIAMS NIH HHS R00 AR055948NIAMS NIH HHS R01 AR065523NIAMS NIH HHS R56 AR075427NIGMS NIH HHS R25 GM103757NIGMS NIH HHS T32 GM007067NLM NIH HHS R01 LM013096
6 · The paper itself

Abstract

The genetic modules that contribute to human evolution are poorly understood. Here we investigate positive selection in the Epidermal Differentiation Complex locus for skin barrier adaptation in diverse HapMap human populations (CEU, JPT/CHB, and YRI). Using Composite of Multiple Signals and iSAFE, we identify selective sweeps for LCE1A-SMCP and involucrin (IVL) haplotypes associated with human migration out-of-Africa, reaching near fixation in European populations. CEU-IVL is associated with increased IVL expression and a known epidermis-specific enhancer. CRISPR/Cas9 deletion of the orthologous mouse enhancer in vivo reveals a functional requirement for the enhancer to regulate Ivl expression in cis. Reporter assays confirm increased regulatory and additive enhancer effects of CEU-specific polymorphisms identified at predicted IRF1 and NFIC binding sites in the IVL enhancer (rs4845327) and its promoter (rs1854779). Together, our results identify a selective sweep for a cis regulatory module for CEU-IVL, highlighting human skin barrier evolution for increased IVL expression out-of-Africa.

Indexed as

Enhancer Elements, GeneticAfricaAllelesAnimalsChromatinChromatin Immunoprecipitation SequencingCRISPR-Cas SystemsDatabases, GeneticGene Expression RegulationGene FrequencyHaplotypesHumansMiceMice, Inbred BALB CMice, Inbred C57BLPolymorphism, GeneticChromatininvolucrinProtein Precursors

Identifiers

PMID33963188
PMCPMC8105351
OpenAlexW3157962459

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.