Evidence map›Paper›PMID 33961028›Full record

ArticleThe Journal of experimental medicine2021

CD1a selectively captures endogenous cellular lipids that broadly block T cell response.

Rachel N Cotton, Marcin Wegrecki, Tan-Yun Cheng, Yi-Ling Chen, Natacha Veerapen, Jérôme Le Nours, Dennis P Orgill, Bohdan Pomahac, Simon G Talbot, Richard Willis and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Sideways lipid presentation by the antigen-presenting molecule CD1c.bioRxiv : the preprint server for biology · 2025
    Article
  4. CD1a and Lipids as Mediators of T Cell Activation in the Skin.The Journal of investigative dermatology · 2025
    Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Lipidomic scanning of self-lipids identifies headless antigens for natural killer T cells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Protein Haptenation and Its Role in Allergy.Chemical research in toxicology · 2024
    Review
  13. CD1a and skin T cells: a pathway for therapeutic intervention.Clinical and experimental dermatology · 2024
    Review
  14. Article
  15. Insights into the CD1 lipidome.Frontiers in immunology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Rachel N Cotton *Graduate Program in Immunology, Harvard Medical School, Boston, MA.ORCID 0000-0002-1698-4409
Marcin Wegrecki *Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia.ORCID 0000-0002-3275-9850
Tan-Yun ChengDivision of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-5178-6985
Yi-Ling ChenMedical Research Council Human Immunology Unit, Medical Research Council Weatherall Institute of Molecular Medicine, National Institute for Health Research, Oxford Biomedical Research Centre, University of Oxford, Oxford, UK.ORCID 0000-0003-3758-0638
Natacha VeerapenInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, UK.ORCID 0000-0003-4182-4236
Jérôme Le NoursInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia.ORCID 0000-0002-2221-7636
Dennis P OrgillDivision of Plastic Surgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-8279-7310
Bohdan PomahacDivision of Plastic Surgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0003-3703-8240
Simon G TalbotDivision of Plastic Surgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-6092-7401
Richard WillisNational Institutes of Health Tetramer Core Facility, Emory University, Atlanta, GA.ORCID 0000-0001-6890-1268
John D AltmanNational Institutes of Health Tetramer Core Facility, Emory University, Atlanta, GA.ORCID 0000-0001-9733-2359
Annemieke de JongDepartment of Dermatology, Columbia University Irving Medical Center, New York, NY.ORCID 0000-0001-6707-6585
Ildiko Van RhijnDivision of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-1446-5701
Rachael A ClarkDepartment of Dermatology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-6105-5764
Gurdyal S BesraInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, UK.ORCID 0000-0002-5605-0395
Graham OggMedical Research Council Human Immunology Unit, Medical Research Council Weatherall Institute of Molecular Medicine, National Institute for Health Research, Oxford Biomedical Research Centre, University of Oxford, Oxford, UK.ORCID 0000-0002-3097-045X
Jamie RossjohnInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia.ORCID 0000-0002-2020-7522
D Branch MoodyDivision of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0003-2306-3058
Brigham and Women's Hospital · USAustralian Research Council · AUNational Institute for Health Research · GBNational Institutes of Health · USUniversity of Birmingham · GBColumbia University Irving Medical Center · US

Funding

CD1 Presentation of Self Lipids to Human T CellsR01AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2002 to 2024
$9.4M
The Next Generation Immunoanalysis CoreP30AR069625 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI CLARK, RACHAEL ANN · 2016 to 2025
$8.8M
Generation of Robust Resident Memory T cells in Barrier Tissues through Skin VaccinationR01AI127654 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI CLARK, RACHAEL ANN, KUPPER, THOMAS S. · 2017 to 2021
$6.0M
Translational and Precision Medicine Resources Core (TRAP)P30AR069632 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI OWENS, DAVID M · 2016 to 2020
$3.9M
Role of secreted phospholipase A2 in the activation of human CD1-restricted T cellsR01AR074037 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DE JONG, ANNEMIEKE · 2019 to 2024
$1.7M
CD1 autoreactive T cells in human inflammatory skin diseaseR37AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI DAVID Branch MOODY · 2025 to 2026
$1.1M
Department of HealthMedical Research Council MC_UU_00008/5Medical Research Council MR/R001154/1Medical Research Council MR/S000542/1NIAID NIH HHS HHSN272201300006CNIAID NIH HHS R01 AI127654NIAMS NIH HHS P30 AR069625NIAMS NIH HHS P30 AR069632NIAMS NIH HHS R01 AR048632NIAMS NIH HHS R01 AR074037NIAMS NIH HHS R37 AR048632Wellcome Trust 209222/Z/17/Z
6 · The paper itself

Abstract

We optimized lipidomics methods to broadly detect endogenous lipids bound to cellular CD1a proteins. Whereas membrane phospholipids dominate in cells, CD1a preferentially captured sphingolipids, especially a C42, doubly unsaturated sphingomyelin (42:2 SM). The natural 42:2 SM but not the more common 34:1 SM blocked CD1a tetramer binding to T cells in all human subjects tested. Thus, cellular CD1a selectively captures a particular endogenous lipid that broadly blocks its binding to TCRs. Crystal structures show that the short cellular SMs stabilized a triad of surface residues to remain flush with CD1a, but the longer lipids forced the phosphocholine group to ride above the display platform to hinder TCR approach. Whereas nearly all models emphasize antigen-mediated T cell activation, we propose that the CD1a system has intrinsic autoreactivity and is negatively regulated by natural endogenous inhibitors selectively bound in its cleft. Further, the detailed chemical structures of natural blockers could guide future design of therapeutic blockers of CD1a response.

Indexed as

Antigen PresentationAntigens, CD1Cell LineCell MembraneHEK293 CellsHumansK562 CellsLymphocyte ActivationPhospholipidsReceptors, Antigen, T-CellT-LymphocytesAntigens, CD1CD1a antigenPhospholipidsReceptors, Antigen, T-Cell

Identifiers

PMID33961028
PMCPMC8111460
OpenAlexW3158464285

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.