Evidence map›Paper›PMID 33958792›Full record

ArticleNature chemical biology2021

Genetically encoded multivalent liquid glycan array displayed on M13 bacteriophage.

Mirat Sojitra, Susmita Sarkar, Jasmine Maghera, Emily Rodrigues, Eric J Carpenter, Shaurya Seth, Daniel Ferrer Vinals, Nicholas J Bennett, Revathi Reddy, Amira Khalil and 11 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Universal Baseline forbioRxiv : the preprint server for biology · 2026
    Article
  6. Probiotic-Based Materials as Living Therapeutics.Advanced materials (Deerfield Beach, Fla.) · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Serum antibody screening using glycan arrays.Chemical Society reviews · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 4 countries.

Mirat SojitraDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Susmita SarkarDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Jasmine MagheraDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Emily RodriguesDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0002-4058-7980
Eric J CarpenterDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Shaurya SethDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Daniel Ferrer VinalsDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Nicholas J BennettDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Revathi ReddyDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Amira KhalilDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Xiaochao XueDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Michael R BellDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Ruixiang Blake ZhengDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Ping ZhangDepartment of Chemistry, University of Calgary, Calgary, Alberta, Canada.
Corwin NycholatDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Justin J BaileyDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Chang-Chun LingDepartment of Chemistry, University of Calgary, Calgary, Alberta, Canada.
Todd L LowaryDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0002-8331-8211
James C PaulsonDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-4589-5322
Matthew S MacauleyDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0003-4579-1048
Ratmir DerdaDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada. ratmir@ualberta.ca.ORCID http://orcid.org/0000-0003-1365-6570
University of Alberta · CAScripps Research Institute · USUniversity of Calgary · CABritish University in Egypt · EG

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ALVAREZ, RICHARD · 2001 to 2010
$80.3M
Viral and Host cDNA Libraries from 1918 Influenza CasesP01AI058113 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2004 to 2010
$20.3M
Treating lung inflammation by targeting SiglecsP01HL107151 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI SCHNAAR, RONALD L · 2011 to 2017
$15.4M
O-Glycosylation of Epidermal Growth Factor-like MotifsR01GM061126 · NIGMS · UNIVERSITY OF GEORGIA · PI HALTIWANGER, ROBERT S. · 2001 to 2021
$9.1M
REGULATION OF SIALOSIDE EXPRESSION IN LEUKOCYTESR01AI050143 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2003 to 2018
$7.0M
Exploiting inhibitory Siglecs for desensitizing mast cellsR01AI132790 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2018 to 2022
$3.1M
Inducing antigen specific B cell toleranceR01AI099141 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2012 to 2016
$2.3M
Role of CD22 in the Germinal Center ReactionR01AI118842 · NIAID · UNIVERSITY OF ALBERTA · PI MACAULEY, MATTHEW SCOTT · 2017 to 2021
$1.4M
NHLBI NIH HHS P01 HL107151NIAID NIH HHS P01 AI058113NIAID NIH HHS R01 AI050143NIAID NIH HHS R01 AI099141NIAID NIH HHS R01 AI118842NIAID NIH HHS R01 AI132790NIGMS NIH HHS R01 GM061126NIGMS NIH HHS U54 GM062116
6 · The paper itself

Abstract

The central dogma of biology does not allow for the study of glycans using DNA sequencing. We report a liquid glycan array (LiGA) platform comprising a library of DNA 'barcoded' M13 virions that display 30-1,500 copies of glycans per phage. A LiGA is synthesized by acylation of the phage pVIII protein with a dibenzocyclooctyne, followed by ligation of azido-modified glycans. Pulldown of the LiGA with lectins followed by deep sequencing of the barcodes in the bound phage decodes the optimal structure and density of the recognized glycans. The LiGA is target agnostic and can measure the glycan-binding profile of lectins, such as CD22, on cells in vitro and immune cells in a live mouse. From a mixture of multivalent glycan probes, LiGAs identify the glycoconjugates with optimal avidity necessary for binding to lectins on living cells in vitro and in vivo.

Indexed as

Microarray AnalysisAnimalsBacterial ProteinsBacteriophage M13MicePolysaccharidesBacterial ProteinsPolysaccharides

Identifiers

PMID33958792
PMCPMC8380037
OpenAlexW3159899980

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.